Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08260_001 | Banana | nucleus | 44.41 | 47.82 |
| VIT_06s0080g00930.t01 | Wine grape | plastid | 37.93 | 35.89 |
| CDY01038 | Canola | plastid | 34.04 | 34.43 |
| Bra034827.1-P | Field mustard | plastid | 34.2 | 34.36 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 36.63 | 34.35 |
| CDY08511 | Canola | plastid | 34.04 | 34.15 |
| AT3G11590.1 | Thale cress | plastid | 34.36 | 34.08 |
| KRG96225 | Soybean | nucleus | 35.98 | 33.89 |
| KRH67971 | Soybean | plastid | 35.49 | 33.18 |
| Solyc11g068720.1.1 | Tomato | nucleus | 34.04 | 33.12 |
| PGSC0003DMT400067737 | Potato | nucleus | 29.98 | 32.4 |
| Solyc10g083190.1.1 | Tomato | plastid | 34.04 | 31.77 |
| PGSC0003DMT400072353 | Potato | plastid | 33.71 | 31.76 |
| Solyc06g074190.2.1 | Tomato | nucleus | 27.23 | 31.0 |
| PGSC0003DMT400015076 | Potato | nucleus | 28.2 | 30.58 |
| KRH30384 | Soybean | plastid | 32.58 | 30.36 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 24.96 | 30.26 |
| Bra001412.1-P | Field mustard | nucleus | 16.86 | 29.97 |
| Bra006620.1-P | Field mustard | nucleus | 21.88 | 29.93 |
| EES11990 | Sorghum | nucleus | 27.55 | 29.93 |
| KRH25284 | Soybean | plastid | 31.93 | 29.89 |
| CDX70996 | Canola | nucleus | 22.69 | 29.47 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 26.9 | 29.33 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 26.42 | 29.26 |
| AT5G22310.1 | Thale cress | nucleus | 22.69 | 29.11 |
| Zm00001d025208_P002 | Maize | nucleus | 27.55 | 29.01 |
| Zm00001d003996_P001 | Maize | nucleus | 26.74 | 29.0 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 26.58 | 28.98 |
| CDX88802 | Canola | nucleus | 21.88 | 28.85 |
| CDX73866 | Canola | cytosol | 17.18 | 28.73 |
| Os02t0506100-00 | Rice | plastid | 20.26 | 28.67 |
| CDY67997 | Canola | mitochondrion, plastid | 21.88 | 28.66 |
| Bra002404.1-P | Field mustard | nucleus | 22.2 | 28.31 |
| CDX92367 | Canola | mitochondrion, plastid | 21.88 | 28.12 |
| Os04t0382800-00 | Rice | nucleus | 25.93 | 28.02 |
| CDY56601 | Canola | cytosol, golgi, plastid | 16.69 | 27.91 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 24.47 | 26.12 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 23.82 | 25.39 |
| KXG30263 | Sorghum | mitochondrion | 25.12 | 24.92 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 23.18 | 24.7 |
| Zm00001d000402_P001 | Maize | mitochondrion | 21.88 | 24.64 |
| GSMUA_Achr6P00380_001 | Banana | nucleus | 15.56 | 22.43 |
| GSMUA_Achr10P... | Banana | nucleus | 22.69 | 20.77 |
| GSMUA_Achr8P01540_001 | Banana | nucleus | 16.86 | 20.55 |
| GSMUA_Achr7P00230_001 | Banana | nucleus | 16.21 | 20.28 |
| GSMUA_Achr2P03040_001 | Banana | nucleus | 14.91 | 20.09 |
| GSMUA_Achr10P... | Banana | nucleus | 21.39 | 20.03 |
| GSMUA_Achr4P23750_001 | Banana | cytosol | 12.8 | 19.36 |
| GSMUA_Achr6P19720_001 | Banana | nucleus | 21.23 | 18.69 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 21.07 | 18.44 |
| GSMUA_Achr9P30230_001 | Banana | nucleus, plastid | 19.29 | 16.69 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P16290_001 | EnsemblPlants:GSMUA_Achr6T16290_001 | EnsemblPlantsGene:GSMUA_Achr6G16290_001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF7 |
| SEG:seg | UniParc:UPI000294A717 | UniProt:M0T7H7 | MapMan:35.1 | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G16290_001]
Coordinates
chr6:+:10870535..10874263
Molecular Weight (calculated)
69654.6 Da
IEP (calculated)
8.533
GRAVY (calculated)
-0.756
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRHNSGGNK FLHGHCNIRK RVCSSPSSAS FASKNHRIKR EIFVPKKGPS TTPVPFWRLR ALSPHSAAGF SEASRHQIIQ DVVKDTRASV SARKLGNALW
101: ELNNTASPRI PKDLQERRLM TEMNTRDRTS GSSMAGRLLH RLSDSSHNPI SELCNRSRTS GHRRMLPLVH HKFHCRDKIH AAVDSQSKGS LMENEACFQG
201: RAPRSSLVGS KNCLKDLQNG LVTSKELVKI LIRFGGIGKQ QTSAISLATA LYCELDQALV QVVQLIQAKN SDHGENSHLV RQFVEEKGAW NGKKQEGIRV
301: AVQSMIEEVK NEKKLRRKAE RMNEKLIMEM AQMKASLANA GKELESERRT REMIEQVCSE MLRGIGDNKT EVEEMKRESA KIREELQKER EMLQLADEWR
401: EERVQMKLSE AKHQFEEKNA AVDQLRFELE AFLAATGRED LVNAQRDAAD SLDITGEEED QEESDGTDSE DSDLHTLELN VNNNNNGYSW RYASAATGDE
501: SKLASTKEKY QRSPKCEVYG SAIFPERVMT EGIKESIVRS FQNLNGYMDE RKPVDPSDRL EQNVEKHKSV EILGNQNIAS STILPHGPSG GCNDKACMNT
601: TILYRTICYN SYTMLIK
101: ELNNTASPRI PKDLQERRLM TEMNTRDRTS GSSMAGRLLH RLSDSSHNPI SELCNRSRTS GHRRMLPLVH HKFHCRDKIH AAVDSQSKGS LMENEACFQG
201: RAPRSSLVGS KNCLKDLQNG LVTSKELVKI LIRFGGIGKQ QTSAISLATA LYCELDQALV QVVQLIQAKN SDHGENSHLV RQFVEEKGAW NGKKQEGIRV
301: AVQSMIEEVK NEKKLRRKAE RMNEKLIMEM AQMKASLANA GKELESERRT REMIEQVCSE MLRGIGDNKT EVEEMKRESA KIREELQKER EMLQLADEWR
401: EERVQMKLSE AKHQFEEKNA AVDQLRFELE AFLAATGRED LVNAQRDAAD SLDITGEEED QEESDGTDSE DSDLHTLELN VNNNNNGYSW RYASAATGDE
501: SKLASTKEKY QRSPKCEVYG SAIFPERVMT EGIKESIVRS FQNLNGYMDE RKPVDPSDRL EQNVEKHKSV EILGNQNIAS STILPHGPSG GCNDKACMNT
601: TILYRTICYN SYTMLIK
001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.