Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G104590.1 | Barley | cytosol | 10.35 | 67.47 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 52.5 | 59.17 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 10.54 | 58.76 |
| CDY69127 | Canola | cytosol | 6.65 | 58.06 |
| Zm00001d048133_P001 | Maize | nucleus | 49.91 | 50.85 |
| Os08t0178300-01 | Rice | nucleus | 51.39 | 50.36 |
| KRH48143 | Soybean | nucleus | 52.5 | 50.0 |
| Bra033870.1-P | Field mustard | nucleus | 50.46 | 49.82 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 51.57 | 49.47 |
| CDY35525 | Canola | nucleus | 50.46 | 49.46 |
| Solyc03g033950.2.1 | Tomato | nucleus | 44.36 | 49.28 |
| PGSC0003DMT400058162 | Potato | nucleus | 51.94 | 49.21 |
| KXG19224 | Sorghum | nucleus | 53.05 | 48.48 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 51.57 | 48.44 |
| AT1G31870.1 | Thale cress | nucleus | 50.09 | 48.31 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 52.31 | 46.02 |
| CDY29914 | Canola | nucleus, vacuole | 50.46 | 45.58 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP03990_001 | EnsemblPlants:GSMUA_AchrUn_randomT03990_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG03990_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | InterPro:Bud13 | PFAM:PF09736 | SEG:seg |
| UniParc:UPI000295FA7F | UniProt:M0U661 | MapMan:16.4.5.2.10 | : | : | : |
Description
Putative BUD13 homolog [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03990_001]
Coordinates
chrchrUn_random:+:17790732..17796190
Molecular Weight (calculated)
61382.1 Da
IEP (calculated)
10.464
GRAVY (calculated)
-1.306
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVPTSKSS ALSLKDYLRR YETGADDQKK KRNKKKKDKP QSRTVGGILV VDEDPVWQKP VQIEQEESEP SGDEKPQIEE DIEVKRMKRL DAIRARKPYH
101: AISEDGSGWV SISDPSKTSK SAAIGRDICP PRQGRARFDT PSPEPKEKPS GSQNSDLSPP RQRRADTPSP EPEKAVAGDG TADISPPWRR SRDDNSPPRR
201: TRRAHSPVPD LSPPRRSQKD LSDDPKVSSR QQDPVDLSPP RRRQRVSSPD ISLPRRTRRL SPGAGGPRAS DDADLSPPRK SSKCLSDDLS PPRRIHPQSP
301: EAIRRQSSPV ADLSPPRKSR KEAPSAKESR RAGLFSAKEI KEEIEKKKKE DTSRFASMDP FLSGRGAEPV FRDKEGKRIS KEEMLKTQEK EKPKEKKLEW
401: GKGLAQKREA EANAKELELE REKPFARTRD DPELDKMLKE RIRWGDPMAH VVKRKSSDLI LEDLGDNEKM KESGFIIPQT IPSHSWLKRG IDFPPNRYGT
501: KPGRHWDGVD RSNGFEKELF KRQNEKRATE REAYLWSVSD M
101: AISEDGSGWV SISDPSKTSK SAAIGRDICP PRQGRARFDT PSPEPKEKPS GSQNSDLSPP RQRRADTPSP EPEKAVAGDG TADISPPWRR SRDDNSPPRR
201: TRRAHSPVPD LSPPRRSQKD LSDDPKVSSR QQDPVDLSPP RRRQRVSSPD ISLPRRTRRL SPGAGGPRAS DDADLSPPRK SSKCLSDDLS PPRRIHPQSP
301: EAIRRQSSPV ADLSPPRKSR KEAPSAKESR RAGLFSAKEI KEEIEKKKKE DTSRFASMDP FLSGRGAEPV FRDKEGKRIS KEEMLKTQEK EKPKEKKLEW
401: GKGLAQKREA EANAKELELE REKPFARTRD DPELDKMLKE RIRWGDPMAH VVKRKSSDLI LEDLGDNEKM KESGFIIPQT IPSHSWLKRG IDFPPNRYGT
501: KPGRHWDGVD RSNGFEKELF KRQNEKRATE REAYLWSVSD M
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.