Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058162 | Potato | nucleus | 89.53 | 76.36 |
| HORVU7Hr1G104590.1 | Barley | cytosol | 11.09 | 65.06 |
| CDY69127 | Canola | cytosol | 7.8 | 61.29 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 11.29 | 56.7 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 51.95 | 52.71 |
| Bra033870.1-P | Field mustard | nucleus | 51.13 | 45.44 |
| CDY35525 | Canola | nucleus | 51.13 | 45.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.28 | 44.36 |
| KRH48143 | Soybean | nucleus | 51.54 | 44.19 |
| AT1G31870.1 | Thale cress | nucleus | 48.67 | 42.25 |
| CDY29914 | Canola | nucleus, vacuole | 50.72 | 41.24 |
| Zm00001d048133_P001 | Maize | nucleus | 44.15 | 40.49 |
| Os08t0178300-01 | Rice | nucleus | 44.97 | 39.67 |
| KXG19224 | Sorghum | nucleus | 46.41 | 38.18 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 43.12 | 37.23 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 43.33 | 36.63 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 43.53 | 34.47 |
Protein Annotations
| EnsemblPlants:Solyc03g033950.2.1 | EnsemblPlantsGene:Solyc03g033950.2 | InterPro:Bud13 | PFAM:PF09736 | SEG:seg | UniParc:UPI0002767BB2 |
| UniProt:K4BFR7 | MapMan:16.4.5.2.10 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:5641185..5646453
Molecular Weight (calculated)
55623.2 Da
IEP (calculated)
10.637
GRAVY (calculated)
-1.381
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLEQIRAR RPFGSVSEDG SGWVSVSSTS NDQISDLSPT WRRPGRNDSP SPEPQLNLSS PSADLSPPRK SRARNDTPSP ESEQPRTQEG DLSPPRKRSA
101: RNDTQRTRIL TPSPEPQLKP SSAKDADLSP PRKRRVRNDT PEPEVKPLST RDADISPPRR QRARNDTPES DMKSLRSRDT DISPPRRRKT RNDTPSPEPK
201: ARPSADLSPP RRRQKYVQSL SDISDVSPPR RGSRAQGDSR ADQGTDLSPL RKKKAQNVLE ARPDSSTTKQ GPKTGLVSGK DIKEEIDRTK KEDWMRFQEM
301: DPLVSGRGAE PVYRDKITGQ RMSKEEFLKS KKKKDEKEKP KEIKLEWGKG LAQKREMEVR LQELENEKDK PFARSRDDPE LDTMLKERVR WGDPMAHLVK
401: KKLDPILPDF GANEKMKDSG FIIPQDIPSH SWIKRGLDAA PNRYGIRPGR HWDGVDRSTG YEKELFKRTN EKQATEREAY LWSVSDM
101: RNDTQRTRIL TPSPEPQLKP SSAKDADLSP PRKRRVRNDT PEPEVKPLST RDADISPPRR QRARNDTPES DMKSLRSRDT DISPPRRRKT RNDTPSPEPK
201: ARPSADLSPP RRRQKYVQSL SDISDVSPPR RGSRAQGDSR ADQGTDLSPL RKKKAQNVLE ARPDSSTTKQ GPKTGLVSGK DIKEEIDRTK KEDWMRFQEM
301: DPLVSGRGAE PVYRDKITGQ RMSKEEFLKS KKKKDEKEKP KEIKLEWGKG LAQKREMEVR LQELENEKDK PFARSRDDPE LDTMLKERVR WGDPMAHLVK
401: KKLDPILPDF GANEKMKDSG FIIPQDIPSH SWIKRGLDAA PNRYGIRPGR HWDGVDRSTG YEKELFKRTN EKQATEREAY LWSVSDM
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.