Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G104590.1 | Barley | cytosol | 12.32 | 81.93 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 12.5 | 71.13 |
| KXG19224 | Sorghum | nucleus | 73.91 | 68.92 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 69.75 | 68.26 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 70.47 | 67.53 |
| Zm00001d048133_P001 | Maize | nucleus | 64.67 | 67.23 |
| CDY69127 | Canola | cytosol | 7.07 | 62.9 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 69.02 | 61.95 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 45.29 | 52.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.36 | 51.39 |
| CDY35525 | Canola | nucleus | 46.92 | 46.92 |
| Bra033870.1-P | Field mustard | nucleus | 46.56 | 46.9 |
| PGSC0003DMT400058162 | Potato | nucleus | 48.01 | 46.41 |
| AT1G31870.1 | Thale cress | nucleus | 46.92 | 46.17 |
| Solyc03g033950.2.1 | Tomato | nucleus | 39.67 | 44.97 |
| KRH48143 | Soybean | nucleus | 46.2 | 44.89 |
| CDY29914 | Canola | nucleus, vacuole | 46.38 | 42.74 |
Protein Annotations
| EnsemblPlants:Os08t0178300-01 | EnsemblPlantsGene:Os08g0178300 | EntrezGene:4344809 | InterPro:Bud13 | ncoils:Coil | PFAM:PF09736 |
| ProteinID:BAD03051.1 | ProteinID:BAF23042.1 | ProteinID:BAT04088.1 | RefSeq:XP_015648116.1 | RefSeq:XP_015648117.1 | SEG:seg |
| UniParc:UPI0000225FCE | UniProt:Q6ZKE8 | MapMan:16.4.5.2.10 | : | : | : |
Description
Protein of unknown function DUF2050, pre-mRNA-splicing factor domain containing protein. (Os08t0178300-01);Hypothetical conserved gene. (Os08t0178300-02)
Coordinates
chr8:+:4586478..4591215
Molecular Weight (calculated)
62976.9 Da
IEP (calculated)
10.312
GRAVY (calculated)
-1.434
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKQQDAST SGAAMSMKEY LKRYQSDDAQ GKAKKKKKKK PKPAAAVGGG VLIVDEDPTW HKPVQIEEEP ASSGDERPLV DEDIEVKRMR RLEAIRAARP
101: YNAIAEDGSG WVTVAAPEDS DGGLTGRRRR NDTPSPERGG AGRKDLSPPR RRQRQDTPSP DPRDAAGKDL SPPRQRRRRQ DTPSPKGSEV AGGHDDLSPP
201: RKSRQQRDPS PPRRLSRHDS KESQDISPPR RRTRHDSEEP QDLSPPRRKG RHDSEEPKDL LPPWRRVRHD SEEPKDLSPP RRRTRHDSEE PEDLSPPRRR
301: TRHDSHEPKD KLPPLKRQAL GDGDISPPRK GRKEVAPKEV RKAGLMTAEE VKEDIRKIKE DERLKFAAQD PSVIGKGAKA VFRDKQGKRI SEEDMRKAKE
401: DTKPKEIHIE WGKGLVQKRE AEARLQELES EKSKPFARTR DDPELDTMLK NRIRWGDPMA HLVKRNDTDL LLEDLGDDEK MKESGFIVPQ NIPSHSWLKR
501: GVDPPPNRYG IKPGRHWDGV DRSNGFEKDM FKLKNEKQAT EQEAYLWSVA DM
101: YNAIAEDGSG WVTVAAPEDS DGGLTGRRRR NDTPSPERGG AGRKDLSPPR RRQRQDTPSP DPRDAAGKDL SPPRQRRRRQ DTPSPKGSEV AGGHDDLSPP
201: RKSRQQRDPS PPRRLSRHDS KESQDISPPR RRTRHDSEEP QDLSPPRRKG RHDSEEPKDL LPPWRRVRHD SEEPKDLSPP RRRTRHDSEE PEDLSPPRRR
301: TRHDSHEPKD KLPPLKRQAL GDGDISPPRK GRKEVAPKEV RKAGLMTAEE VKEDIRKIKE DERLKFAAQD PSVIGKGAKA VFRDKQGKRI SEEDMRKAKE
401: DTKPKEIHIE WGKGLVQKRE AEARLQELES EKSKPFARTR DDPELDTMLK NRIRWGDPMA HLVKRNDTDL LLEDLGDDEK MKESGFIVPQ NIPSHSWLKR
501: GVDPPPNRYG IKPGRHWDGV DRSNGFEKDM FKLKNEKQAT EQEAYLWSVA DM
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.