Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G104590.1 | Barley | cytosol | 11.86 | 75.9 |
| KXG19224 | Sorghum | nucleus | 77.97 | 69.93 |
| CDY69127 | Canola | cytosol | 7.72 | 66.13 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 12.05 | 65.98 |
| Os08t0178300-01 | Rice | nucleus | 67.23 | 64.67 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 62.71 | 59.04 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 61.77 | 56.94 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 60.45 | 52.2 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 46.52 | 51.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.85 | 49.91 |
| CDY35525 | Canola | nucleus | 47.08 | 45.29 |
| Bra033870.1-P | Field mustard | nucleus | 46.7 | 45.26 |
| PGSC0003DMT400058162 | Potato | nucleus | 48.4 | 45.01 |
| AT1G31870.1 | Thale cress | nucleus | 47.27 | 44.74 |
| KRH48143 | Soybean | nucleus | 47.27 | 44.19 |
| Solyc03g033950.2.1 | Tomato | nucleus | 40.49 | 44.15 |
| CDY29914 | Canola | nucleus, vacuole | 46.89 | 41.57 |
Protein Annotations
| EnsemblPlants:Zm00001d048133_P001 | EnsemblPlants:Zm00001d048133_T001 | EnsemblPlantsGene:Zm00001d048133 | InterPro:Bud13 | ncoils:Coil | PANTHER:PTHR31809 |
| PFAM:PF09736 | ProteinID:AQL08920.1 | SEG:seg | UniParc:UPI000220E982 | UniProt:K7VPB1 | MapMan:16.4.5.2.10 |
Description
pre-mRNA-splicing factor of RES complex protein
Coordinates
chr9:+:150629842..150635876
Molecular Weight (calculated)
59743.4 Da
IEP (calculated)
10.462
GRAVY (calculated)
-1.244
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARQPPPSS ASAPAPAAGL SMKDYLKRYV SGPGTDGDQK RAKKKTKKKP KPAGGVLIVD EDPVWQKPVQ VDEEPASSGD DKPLVDEDIE VKRMRRLEAI
101: RAARPYNAIA EDGSGWVTVA APEEQGGGST HQRRNDTPLP ERGRAPTRED LSPVRRRQRR DTPSPVHGDA AAKDFSPPRR PSPVHGDAAA KDFSPPRRRQ
201: RRNTPSPVHG DAAAKDFSPP RRRQRRDTPS PVPDGAAAKD FSPPRRRQRR QDTPSPKDSG AADQDDMSPP RKSRQREDLS PPRKGARHIT EEPRDISPRK
301: KRDISPSRKS TKEGASKQVK KSGLMTAEEV KEDIRKIKEA EMIKFASQDP SLVGKGAKAV FRDKEGRRIS EEEMCKAKEP EKPKEIHIEW GKGLVQKREA
401: ESRLKEIEAE KSKPFARTRD DPELDNMLKE RIRWGDPMAH LVKRKDPEFI LEDLGDDEKM KESGFIVPQS IPTHSWLKRG VDAPPNRYGI KPGRHWDGVD
501: RSNGFEKDMF KLKNEKQAME QEAYLWSVSD M
101: RAARPYNAIA EDGSGWVTVA APEEQGGGST HQRRNDTPLP ERGRAPTRED LSPVRRRQRR DTPSPVHGDA AAKDFSPPRR PSPVHGDAAA KDFSPPRRRQ
201: RRNTPSPVHG DAAAKDFSPP RRRQRRDTPS PVPDGAAAKD FSPPRRRQRR QDTPSPKDSG AADQDDMSPP RKSRQREDLS PPRKGARHIT EEPRDISPRK
301: KRDISPSRKS TKEGASKQVK KSGLMTAEEV KEDIRKIKEA EMIKFASQDP SLVGKGAKAV FRDKEGRRIS EEEMCKAKEP EKPKEIHIEW GKGLVQKREA
401: ESRLKEIEAE KSKPFARTRD DPELDNMLKE RIRWGDPMAH LVKRKDPEFI LEDLGDDEKM KESGFIVPQS IPTHSWLKRG VDAPPNRYGI KPGRHWDGVD
501: RSNGFEKDMF KLKNEKQAME QEAYLWSVSD M
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.