Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033870.1-P | Field mustard | nucleus | 97.64 | 98.36 |
| CDY29914 | Canola | nucleus, vacuole | 94.57 | 87.15 |
| AT1G31870.1 | Thale cress | nucleus | 79.71 | 78.43 |
| CDY69127 | Canola | cytosol | 8.15 | 72.58 |
| HORVU7Hr1G104590.1 | Barley | cytosol | 9.6 | 63.86 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 49.64 | 57.08 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 9.78 | 55.67 |
| PGSC0003DMT400058162 | Potato | nucleus | 53.08 | 51.31 |
| Solyc03g033950.2.1 | Tomato | nucleus | 45.11 | 51.13 |
| KRH48143 | Soybean | nucleus | 52.36 | 50.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.46 | 50.46 |
| Zm00001d048133_P001 | Maize | nucleus | 45.29 | 47.08 |
| Os08t0178300-01 | Rice | nucleus | 46.92 | 46.92 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 45.11 | 44.15 |
| KXG19224 | Sorghum | nucleus | 46.92 | 43.75 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 44.75 | 42.88 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 45.11 | 40.49 |
Protein Annotations
| EnsemblPlants:CDY35525 | EnsemblPlantsGene:GSBRNA2T00058573001 | InterPro:Bud13 | PFAM:PF09736 | ProteinID:CDY35525 | ProteinID:CDY35525.1 |
| SEG:seg | UniParc:UPI0004EDCB95 | UniProt:A0A078HAW5 | MapMan:16.4.5.2.10 | : | : |
Description
BnaA05g16610DBnaA05g16610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAW5]
Coordinates
chrLK032354:+:7132..10025
Molecular Weight (calculated)
63321.3 Da
IEP (calculated)
10.470
GRAVY (calculated)
-1.426
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPRTGVKS MKDYLKKYES SEVIEKKKKK KMKKPSKPEP TGVLVVDEDP VWQKQVDPHE EDNENDSAEE RPVVDEDIEV KRMRRLEEIK ARRAQNAIAE
101: DGSGWVSLSS DPQRSDDISP PRRHRTRNDS PSPEPGGSRG SLPETDMSPP RRRKRHYTPS PEPNRLHAKP VSLDSDLTPP RKRRARNDSP SPEPEDTAPK
201: SLGEDLSPPR KRRVHPVSPE RSGKRSDSLE LDSDLSPPRR KKDSLVSDVN KRSNDLSPPR RRRYHSPSPE PDRRPSKSLR SNSDLSPPRR SVSVKGSRDS
301: DLSPQRKTVS RSSNFDSSPP RRPRRESPPP QTSKEQRKTG LISGKDIGSE YRKKKQDEQL RFKNMDSELT GQNAEAVFRD KITGKRISKE EYLQSKQKKV
401: IEKPKEIKLE WGQGLAQKRD AEARLQELEL EKDKPFARTR DDPELDQMMK ERVRWGDPMA HLVKKKQYEA PLMDLGDNEE MKKSGFVIPQ SIPKHSWITR
501: GLEAAPNRYG IKPGRHWDGV DRSTGHEKDR FKKTSEKKAT ESEAYLWSVA DM
101: DGSGWVSLSS DPQRSDDISP PRRHRTRNDS PSPEPGGSRG SLPETDMSPP RRRKRHYTPS PEPNRLHAKP VSLDSDLTPP RKRRARNDSP SPEPEDTAPK
201: SLGEDLSPPR KRRVHPVSPE RSGKRSDSLE LDSDLSPPRR KKDSLVSDVN KRSNDLSPPR RRRYHSPSPE PDRRPSKSLR SNSDLSPPRR SVSVKGSRDS
301: DLSPQRKTVS RSSNFDSSPP RRPRRESPPP QTSKEQRKTG LISGKDIGSE YRKKKQDEQL RFKNMDSELT GQNAEAVFRD KITGKRISKE EYLQSKQKKV
401: IEKPKEIKLE WGQGLAQKRD AEARLQELEL EKDKPFARTR DDPELDQMMK ERVRWGDPMA HLVKKKQYEA PLMDLGDNEE MKKSGFVIPQ SIPKHSWITR
501: GLEAAPNRYG IKPGRHWDGV DRSTGHEKDR FKKTSEKKAT ESEAYLWSVA DM
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.