Factsheet for Zm00001d034710_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93167	Sorghum	nucleus	84.03	88.25
PGSC0003DMT400085883	Potato	mitochondrion	30.67	66.21
Os03t0826400-01	Rice	nucleus	64.86	65.06
GSMUA_Achr10P...	Banana	nucleus	48.88	53.5
TraesCS5B01G502600.1	Wheat	cytosol	52.08	52.92
TraesCS5A01G488700.1	Wheat	nucleus	67.73	52.61
TraesCS5D01G503700.1	Wheat	nucleus	67.73	52.48
Bra018163.1-P	Field mustard	nucleus	48.24	51.54
CDX99063	Canola	nucleus	48.24	51.54
CDX86130	Canola	nucleus	49.2	51.33
AT3G47120.1	Thale cress	nucleus	55.27	49.15
HORVU5Hr1G115170.1	Barley	nucleus, plastid	68.05	47.97
TraesCS2B01G168700.1	Wheat	nucleus	66.45	47.6
TraesCS2D01G147300.1	Wheat	nucleus	66.45	47.6
TraesCS2A01G143700.1	Wheat	nucleus	66.13	47.37
PGSC0003DMT400014369	Potato	nucleus	49.52	44.03
Solyc03g119430.2.1	Tomato	nucleus	49.52	41.01
KRH17025	Soybean	nucleus	53.35	38.3
KRH72666	Soybean	nucleus	53.67	38.01
VIT_06s0004g06440.t01	Wine grape	nucleus	50.8	37.06
Zm00001d053613_P001	Maize	nucleus	14.06	13.5
Zm00001d016410_P006	Maize	nucleus	14.06	13.37

Protein Annotations

EntrezGene:100282627	Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	UniProt:A0A1D6LA85	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0016020	GO:GO:0016021	GO:GO:0016607
GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM11041.1
ProteinID:ONM11043.1	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139
PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF90229	TMHMM:TMhelix	UniParc:UPI0008423EB9	EnsemblPlantsGene:Zm00001d034710	EnsemblPlants:Zm00001d034710_P003	EnsemblPlants:Zm00001d034710_T003
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

C3H-transcription factor 330Zinc finger CCCH domain-containing protein 42

Coordinates

chr1:+:300423240..300426735

Molecular Weight (calculated)

36091.8 Da

IEP (calculated)

9.145

GRAVY (calculated)

-1.226

Length

313 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QIINQKEALL GIGEDASWHA KFKDSAYVYV GGVPFDLTEG DLLAIFAQYG EVVDVNLVRD KGTGKSKGFA FLAYEDQRST ILAVVLIFIV
101: LACLISHGKD NLNGAKVLGR IIKVDHVSKY KKKEEEDEEE LQKKREARGV CYAFQKGECN RGASCRYSHD EQRNANTGWG SKEDSGARWE HDKHSDVPKS
201: RGMCYAFQKG ECNRGASCKF LHDEQRNANS RRDSRDGGPS RSERYGDRES RSRHDDRRAE DRDRFRRDNS PERSRGERQR DDDRSDRGRE AKSERRRYDV
301: EHEDRKRSRH GRE

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.