Factsheet for TraesCS2D01G147300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G143700.1	Wheat	nucleus	97.71	97.71
TraesCS2B01G168700.1	Wheat	nucleus	97.03	97.03
TraesCS5D01G503700.1	Wheat	nucleus	84.44	91.34
HORVU5Hr1G115170.1	Barley	nucleus, plastid	85.81	84.46
EER93167	Sorghum	nucleus	48.51	71.14
Os03t0826400-01	Rice	nucleus	48.51	67.95
Zm00001d034710_P003	Maize	nucleus	47.6	66.45
PGSC0003DMT400085883	Potato	mitochondrion	21.97	66.21
GSMUA_Achr10P...	Banana	nucleus	36.61	55.94
CDX86130	Canola	nucleus	37.07	54.0
CDX99063	Canola	nucleus	35.24	52.56
Bra018163.1-P	Field mustard	nucleus	35.24	52.56
AT3G47120.1	Thale cress	nucleus	39.13	48.58
PGSC0003DMT400014369	Potato	nucleus	36.38	45.17
Solyc03g119430.2.1	Tomato	nucleus	36.38	42.06
KRH17025	Soybean	nucleus	39.13	39.22
VIT_06s0004g06440.t01	Wine grape	nucleus	38.22	38.93
KRH72666	Soybean	nucleus	38.67	38.24
TraesCS6D01G166200.2	Wheat	nucleus	11.21	13.96

Protein Annotations

Gene3D:1.10.150.840	Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139
PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF90229	EnsemblPlantsGene:TraesCS2D01G147300	EnsemblPlants:TraesCS2D01G147300.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd12411
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:88287866..88294407

Molecular Weight (calculated)

50809.6 Da

IEP (calculated)

8.526

GRAVY (calculated)

-1.692

Length

437 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEAAL GLSEDASWHA KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG EVVDVNLVRD KATGKSKGFA FVAYEDQRST VLSVDNLNGA
101: KVLGRIIRVD HVEKYKKKEE EDEEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESCGV CYAFQKGECS
201: RGDTCRFSHD EQVAVQGRGV CYAFQKGECS RGASCKFSHD EQRNANTDRG SREDSNARRQ HDHDPPKSHK IFPDRTKEEA RSGDRDGQSS RSELYRDRDS
301: RTRYGDRDTK DRDRNMHEKS PERSRGDRQR GDDRGREDRS DTKDRDRNGH EKSPERSRGD RQRGDDRGRE DRSDIKDRDR NGYEKSPERP RGDRQRGDDR
401: RREDRSESKR SRHDRDSGVR YERRGDEDEE RYRKLQR

Best Arabidopsis Sequence Match ( AT3G47120.2 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE
201: EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR
301: RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.