CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17025	Soybean	nucleus	87.78	88.99
PGSC0003DMT400085883	Potato	mitochondrion	23.76	72.41
GSMUA_Achr10P...	Banana	nucleus	36.43	56.29
EER93167	Sorghum	nucleus	37.33	55.37
Bra018163.1-P	Field mustard	nucleus	36.65	55.29
CDX86130	Canola	nucleus	37.33	55.0
CDX99063	Canola	nucleus	36.43	54.95
Zm00001d034710_P003	Maize	nucleus	38.01	53.67
PGSC0003DMT400014369	Potato	nucleus	41.86	52.56
Os03t0826400-01	Rice	nucleus	36.88	52.24
TraesCS5B01G502600.1	Wheat	cytosol	35.29	50.65
Solyc03g119430.2.1	Tomato	nucleus	42.31	49.47
AT3G47120.1	Thale cress	nucleus	39.37	49.43
VIT_06s0004g06440.t01	Wine grape	nucleus	41.4	42.66
TraesCS5D01G503700.1	Wheat	nucleus	38.46	42.08
TraesCS5A01G488700.1	Wheat	nucleus	38.24	41.94
TraesCS2B01G168700.1	Wheat	nucleus	38.24	38.67
TraesCS2D01G147300.1	Wheat	nucleus	38.24	38.67
TraesCS2A01G143700.1	Wheat	nucleus	38.01	38.44
HORVU5Hr1G115170.1	Barley	nucleus, plastid	38.46	38.29
KRH03775	Soybean	nucleus	12.44	15.07
KRH56658	Soybean	nucleus	11.54	13.97

Protein Annotations

Gene3D:1.10.150.840	EntrezGene:100792988	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02001225	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G226100	GO:GO:0000384	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005686	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	GO:GO:0070274	GO:GO:0071011	GO:GO:0071013	UniProt:I1JHC2
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	EnsemblPlants:KRH72666	ProteinID:KRH72666	ProteinID:KRH72666.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139
PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF90229	UniParc:UPI000296FCEB	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:41300209..41305818

Molecular Weight (calculated)

52659.6 Da

IEP (calculated)

8.693

GRAVY (calculated)

-1.903

Length

442 amino acids

Sequence
(BLAST)

001: MNPLTLVKRT QNINAREAAL GIGEQASWHT KYKDSAYVFV GGIPFDLTEG DLLAVFAQYG EVVDVNLVRD KGTGKSKGFA FLAYEDQRST NLAVDNLNGA
101: QVLGRIIRVD HVDKYKKKEE EDEETERQKR EARGVCRAFQ RGECTRGASC KFSHDEQRAA NTGWGREEDK PKWGHDKFEG PKKERRSGNN QSNHIPETRD
201: RDSRTRARNF DAELDNQPKK SDRRETAKRW HDNNDDKFEG RENNSRREEN RSRRHEDDDK FEGRENNSRR EDKRSRRHED DDKFEGRENN SKREEKRSRR
301: HGDDEFEHKS REDGYRREEK GSRMDDYDGM ELEPKDQRRR EDKRSIKPDD VEFEPKSRDS DIREDKKSRR RDDDDFLSKS REPHSNREDM RSRKHGEDES
401: APKSRENYAR KQDDRSYRND SSRTESKERY DFDRREEKRP RR

Best Arabidopsis Sequence Match ( AT3G47120.2 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE
201: EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR
301: RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.