CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89181
KRG91075
KRH01744
KRH03466
KRH03775
KRH11252
KRH16932
KRH24483
KRH29472
KRH35698
KRH39527
KRH42233
KRH45468
KRH45469
KRH46935
KRH48832
KRH49506
KRH51370
KRH51535
KRH53706
KRH54542
KRH56658
KRH56919
KRH58350
KRH60674
KRH60850
KRH63357
KRH66476
KRH72549
KRH74431
KRH75634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19960.1	KRH11252	AT1G02140.1	21798944
AT5G19960.1	KRH48832	AT1G02140.1	21798944
AT5G19960.1	KRH66476	AT1G02140.1	21798944
AT5G19960.1	KRG91075	AT1G49850.1	21798944
AT5G19960.1	KRH35698	AT1G49850.1	21798944
AT5G19960.1	KRH01744	AT2G43370.1	21798944
AT5G19960.1	KRH46935	AT2G43370.1	21798944
AT5G19960.1	KRH51370	AT3G06980.1	21798944
AT5G19960.1	KRH60674	AT3G06980.1	21798944
AT5G19960.1	KRH03466	AT3G47620.1	21798944
AT5G19960.1	KRH54542	AT3G47620.1	21798944
AT5G19960.1	KRH56919	AT3G47620.1	21798944
AT5G19960.1	KRH63357	AT3G47620.1	21798944
AT5G19960.1	KRH42233	AT3G60360.1	21798944
AT5G19960.1	KRH58350	AT3G60360.1	21798944
AT5G19960.1	KRH24483	AT4G34460.1	21798944
AT5G19960.1	KRH29472	AT4G34460.1	21798944
AT5G19960.1	KRH51535	AT4G34460.1	21798944
AT5G19960.1	KRH60850	AT4G34460.1	21798944
AT5G19960.1	KRH16932	AT5G05190.1	21798944
AT5G19960.1	KRH53706	AT5G05190.1	21798944
AT5G19960.1	KRH72549	AT5G05190.1	21798944
AT5G19960.1	KRH03775	AT5G19960.1	21798944
AT5G19960.1	KRH56658	AT5G19960.1	21798944
AT5G19960.1	KRG89181	AT5G42820.1	21798944
AT5G19960.1	KRH49506	AT5G42820.1	21798944
AT5G19960.1	KRH39527	AT5G65683.1	21798944
AT5G19960.1	KRH45468	AT5G65683.1	21798944
AT5G19960.1	KRH45469	AT5G65683.1	21798944
AT5G19960.1	KRH74431	AT5G65683.1	21798944
AT5G19960.1	KRH75634	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03775	Soybean	nucleus	87.95	87.95
VIT_11s0016g04610.t01	Wine grape	nucleus	50.14	52.74
GSMUA_Achr7P08450_001	Banana	nucleus	43.29	43.65
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	43.01	39.85
AT5G19960.1	Thale cress	cytosol	35.89	38.87
CDY42320	Canola	nucleus	34.25	38.7
Bra020076.1-P	Field mustard	nucleus	33.42	37.77
CDX70900	Canola	nucleus	33.15	37.46
CDY44955	Canola	nucleus	33.15	37.46
Zm00001d016410_P006	Maize	nucleus	33.7	37.39
KXG29764	Sorghum	nucleus	33.7	37.39
Zm00001d053613_P001	Maize	nucleus	32.88	36.81
TraesCS6B01G205800.2	Wheat	nucleus	34.79	36.18
TraesCS6D01G166200.2	Wheat	nucleus	34.79	36.18
TraesCS6A01G178400.1	Wheat	nucleus	33.97	35.53
HORVU6Hr1G036810.5	Barley	nucleus	32.88	33.43
CDX88867	Canola	nucleus	30.14	25.35
Bra006526.1-P	Field mustard	nucleus	29.86	24.83
KRH17025	Soybean	nucleus	14.25	11.93
KRH72666	Soybean	nucleus	13.97	11.54

Protein Annotations

EntrezGene:100816804	Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02002795	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G011400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1K1C5	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH56658	ProteinID:KRH56658	ProteinID:KRH56658.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI00023C3EBC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:1012793..1016978

Molecular Weight (calculated)

42711.0 Da

IEP (calculated)

5.190

GRAVY (calculated)

-1.341

Length

365 amino acids

Sequence
(BLAST)

001: MTMDDDSSIY VGGLPYDATE ETIRTVFNLY GAILDVKIIN DPRTRGKCYC FVTFTNPRSA IDAINDMNGR TIDGRVVKVN GVRTRGGRSN FGRERYYYHN
101: DERNGDWDRS RDRDRDYDHD SNDRDGYRNR SSDWGRDRDR SRDRDQDRDR RFEHMHDYDQ AREAMLENDW IREDDRVENE QEHSRGHGGD VDRDHNIDLN
201: VDRKMDRTSD PDRSFGEDRK DQSRRNNDLN VTNQHIMDLS SDSAGTHNEQ LEAQLERSTQ QLDQLKKEVS QMEEGLEEKR LHVKELQKQS KKLEDAVINA
301: KKNSSYRQMQ LMKLHKGFLQ VKDCTEKLKT SEKELQALID TAMSEIDCDG LKDGQLTNGS LDGRL

Best Arabidopsis Sequence Match ( AT5G19960.1 )
(BLAST)

001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP

Arabidopsis Description

Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.