Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P08450_001 | Banana | nucleus | 60.91 | 66.3 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 46.45 | 52.74 |
| KXG29764 | Sorghum | nucleus | 37.56 | 44.98 |
| Zm00001d016410_P006 | Maize | nucleus | 36.8 | 44.07 |
| Zm00001d053613_P001 | Maize | nucleus | 35.79 | 43.25 |
| KRH56658 | Soybean | nucleus | 39.85 | 43.01 |
| KRH03775 | Soybean | nucleus | 39.34 | 42.47 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 36.55 | 41.03 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 36.55 | 41.03 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 36.04 | 40.69 |
| CDX70900 | Canola | nucleus | 31.98 | 39.01 |
| CDY42320 | Canola | nucleus | 31.98 | 39.01 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 35.28 | 38.72 |
| Bra020076.1-P | Field mustard | nucleus | 31.73 | 38.7 |
| CDY44955 | Canola | nucleus | 31.22 | 38.08 |
| AT5G19960.1 | Thale cress | cytosol | 31.98 | 37.39 |
| CDX88867 | Canola | nucleus | 28.17 | 25.58 |
| Bra006526.1-P | Field mustard | nucleus | 27.66 | 24.83 |
| GSMUA_Achr10P... | Banana | nucleus | 13.71 | 18.88 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr10G28330_001 | EnsemblPlants:GSMUA_Achr10P28330_001 | EnsemblPlants:GSMUA_Achr10T28330_001 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M0RM57 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0002956DA4 |
| SEG:seg | : | : | : | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G28330_001]
Coordinates
chr10:-:31184616..31192178
Molecular Weight (calculated)
45822.7 Da
IEP (calculated)
5.410
GRAVY (calculated)
-1.297
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRKEVLRP FSCPSSPSPP QRSEWSTREG KEEVSASAGA AMTLDDEKSI YVGGLPYDCT QEDLRRAFDL YGAIVDVKII NDRQVGGKCY GFVTFRNPRS
101: AVDAIMDMNG RKIGGRVVRV NEVHSRGGRP NFHRENFHRD SDRDDDWERG RERERDHMRD RFRYLDRNDE RSRDHDRQRE REIDIERGRN FDRARSHPLD
201: QDRDREGDDH EHPGGHDRDW EGDRDMDWDH DRDVDKTKDH DGGKDMDKEQ QLRQKNGADF NEHPSRDLSS NSSDDYYGQV KEKLELSIQR REDLQKELTI
301: VGEKIDEKQH LISDLQMKYQ KLEDALTAAK KLTYQRQSML MKLHSCFARA QDYTERLKSS EHELQSLVDV AMSDVGMGED AGGRDGSLYA NGQV
101: AVDAIMDMNG RKIGGRVVRV NEVHSRGGRP NFHRENFHRD SDRDDDWERG RERERDHMRD RFRYLDRNDE RSRDHDRQRE REIDIERGRN FDRARSHPLD
201: QDRDREGDDH EHPGGHDRDW EGDRDMDWDH DRDVDKTKDH DGGKDMDKEQ QLRQKNGADF NEHPSRDLSS NSSDDYYGQV KEKLELSIQR REDLQKELTI
301: VGEKIDEKQH LISDLQMKYQ KLEDALTAAK KLTYQRQSML MKLHSCFARA QDYTERLKSS EHELQSLVDV AMSDVGMGED AGGRDGSLYA NGQV
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.