Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020076.1-P | Field mustard | nucleus | 92.57 | 92.57 |
| CDY42320 | Canola | nucleus | 92.26 | 92.26 |
| CDX70900 | Canola | nucleus | 69.35 | 69.35 |
| AT5G19960.1 | Thale cress | cytosol | 56.35 | 54.01 |
| CDX88867 | Canola | nucleus | 53.25 | 39.63 |
| KXG29764 | Sorghum | nucleus | 34.98 | 34.35 |
| Zm00001d016410_P006 | Maize | nucleus | 34.37 | 33.74 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 37.46 | 33.43 |
| KRH56658 | Soybean | nucleus | 37.46 | 33.15 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 35.6 | 33.14 |
| Zm00001d053613_P001 | Maize | nucleus | 33.44 | 33.13 |
| KRH03775 | Soybean | nucleus | 35.6 | 31.51 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 38.08 | 31.22 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 31.89 | 29.51 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 31.58 | 29.06 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 31.27 | 28.77 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 30.34 | 27.3 |
| CDX99063 | Canola | nucleus | 16.72 | 18.43 |
| CDX86130 | Canola | nucleus | 15.48 | 16.67 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:A0A078I287 | UniProt:A0A078I287 | EnsemblPlants:CDY44955 | ProteinID:CDY44955 |
| ProteinID:CDY44955.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00081115001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR23147 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE08BD |
Description
BnaA02g04600DBnaA02g04600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I287]
Coordinates
chrLK032606:+:207935..210292
Molecular Weight (calculated)
36670.1 Da
IEP (calculated)
5.385
GRAVY (calculated)
-1.111
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMDDNNSVY VGGLPYDITE EALRRVFSPY GTVHDIKIVN DQSVRGKCYG FVTFSNRRSA DDAIQDMDGN IIGGRVVRVN EVTTRFGGRL SSGAQGRFQP
101: QSPDERSDFS WERDRYRERD RSQERGRDRY EHSRGFERRS DHGMVDRNGY KERGFEGEEG GDWRGDSGRG VNGNSDHEGR SQETKREDSS MLDGGRGREG
201: KDHISNSNGD HSFQVKGDIE ALIKTRDLLH DEVLVMEGRL RAKEDLCAEL QQKFETLEDL LNGEKKLTSQ RRKELAKLHK SYSRVRECSD NVKDCEQELQ
301: SLVNSVAREG VVGADEGLEN GYA
101: QSPDERSDFS WERDRYRERD RSQERGRDRY EHSRGFERRS DHGMVDRNGY KERGFEGEEG GDWRGDSGRG VNGNSDHEGR SQETKREDSS MLDGGRGREG
201: KDHISNSNGD HSFQVKGDIE ALIKTRDLLH DEVLVMEGRL RAKEDLCAEL QQKFETLEDL LNGEKKLTSQ RRKELAKLHK SYSRVRECSD NVKDCEQELQ
301: SLVNSVAREG VVGADEGLEN GYA
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.