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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
PPI
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG29764 Sorghum nucleus 91.72 90.88
Zm00001d016410_P006 Maize nucleus 90.18 89.36
TraesCS6D01G166200.2 Wheat nucleus 69.94 64.96
TraesCS6A01G178400.1 Wheat nucleus 69.33 64.76
TraesCS6B01G205800.2 Wheat nucleus 69.63 64.67
HORVU6Hr1G036810.5 Barley nucleus 68.1 61.84
VIT_11s0016g04610.t01 Wine grape nucleus 40.8 38.33
GSMUA_Achr7P08450_001 Banana nucleus 41.1 37.02
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 43.25 35.79
CDY42320 Canola nucleus 34.05 34.37
Bra020076.1-P Field mustard nucleus 33.74 34.06
CDY44955 Canola nucleus 33.13 33.44
CDX70900 Canola nucleus 32.82 33.13
KRH56658 Soybean nucleus 36.81 32.88
AT5G19960.1 Thale cress cytosol 32.82 31.75
KRH03775 Soybean nucleus 34.97 31.23
Bra006526.1-P Field mustard nucleus 27.91 20.73
CDX88867 Canola nucleus 27.3 20.51
Zm00001d034710_P003 Maize nucleus 13.5 14.06
Protein Annotations
Gene3D:3.30.70.330MapMan:35.2UniProt:A0A1D6QQX6ProteinID:AQK59907.1ncoils:CoilGO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFscan:PS50102PANTHER:PTHR23147InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360
SUPFAM:SSF54928UniParc:UPI0008433942EnsemblPlantsGene:Zm00001d053613EnsemblPlants:Zm00001d053613_P001EnsemblPlants:Zm00001d053613_T001SEG:seg
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr4:-:236483017..236493112
Molecular Weight (calculated)
37893.6 Da
IEP (calculated)
6.006
GRAVY (calculated)
-1.248
Length
326 amino acids
Sequence
(BLAST)
001: MAVDEVNSVY VGSLPYEANE EMLRDAFGYY GTIVSVKVIN DHTIKGKCYG FVTFTHPRAA EQAIAGMDGK KLGNRIIRVN EVRTRGPRDF GRDGFRRDPR
101: RYGRDPYWDR RDREQSYDRE RDPYHDRDSD RSREHDRERD YEHGGFNREV DYPMDRDHEV DDIHPREHDR AAETHNMDSD NDKYKEHGSR KSHPKGRDSK
201: DLSSSSDLQN DGKHQLDKTI QMREDLENEV SQIKDKISAK GQHIADLQKK AQKLEDELAA ARKVSSERQL AVTDLYKHFL QLQDYNDRVK TAEHRLQSLV
301: DAAMAELDMA EDATTRDGSM YENGVV
Best Arabidopsis Sequence Match ( AT5G19960.1 )
(BLAST)
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.