Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G205800.2 | Wheat | nucleus | 99.15 | 99.15 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 95.73 | 96.28 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 94.87 | 92.76 |
| Zm00001d016410_P006 | Maize | nucleus | 67.52 | 72.04 |
| KXG29764 | Sorghum | nucleus | 67.52 | 72.04 |
| Zm00001d053613_P001 | Maize | nucleus | 64.96 | 69.94 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 37.89 | 38.33 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 39.03 | 37.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 41.03 | 36.55 |
| KRH03775 | Soybean | nucleus | 36.18 | 34.79 |
| KRH56658 | Soybean | nucleus | 36.18 | 34.79 |
| AT5G19960.1 | Thale cress | cytosol | 32.19 | 33.53 |
| CDX70900 | Canola | nucleus | 30.48 | 33.13 |
| Bra020076.1-P | Field mustard | nucleus | 29.63 | 32.2 |
| CDY42320 | Canola | nucleus | 29.34 | 31.89 |
| CDY44955 | Canola | nucleus | 29.06 | 31.58 |
| Bra006526.1-P | Field mustard | nucleus | 27.92 | 22.32 |
| CDX88867 | Canola | nucleus | 27.07 | 21.89 |
| TraesCS5D01G503700.1 | Wheat | nucleus | 14.81 | 12.87 |
| TraesCS2D01G147300.1 | Wheat | nucleus | 13.96 | 11.21 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G166200.2 | EnsemblPlantsGene:TraesCS6D01G166200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR15241 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd00590 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:147236816..147241650
Molecular Weight (calculated)
41089.9 Da
IEP (calculated)
5.418
GRAVY (calculated)
-1.438
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNEETSVY VGGLPYDADE DMLRSYFGPC GTIVSVKVIN DQRIRGKCYG FVTYTQHRAA QRAILEMDGK QIGNRAVRVN EVRTRGNTRD FGRDGFRRDP
101: VRDGRDVYWD RRDRERSYDR HRDRDPYHDR DSDRPRDHDR DRYDERGGFD HEMDYSMDRD HEGDERRARD LYRGDHDRPV EMRMDSDNDR DKENSKGYDS
201: ERDKDDKEQP PRKRFSRPKG RESRDISSSS DELQNDAKHQ LDKAIQMHED LENEVSQIRD KVTSKDHHIA DLQKKSQKLE DELAAARKVS SERQLTVTKL
301: YKSFLQLQDY NDRAKTAEED LKALVDSAMA EVDMAEDATT KDGSGYENGM A
101: VRDGRDVYWD RRDRERSYDR HRDRDPYHDR DSDRPRDHDR DRYDERGGFD HEMDYSMDRD HEGDERRARD LYRGDHDRPV EMRMDSDNDR DKENSKGYDS
201: ERDKDDKEQP PRKRFSRPKG RESRDISSSS DELQNDAKHQ LDKAIQMHED LENEVSQIRD KVTSKDHHIA DLQKKSQKLE DELAAARKVS SERQLTVTKL
301: YKSFLQLQDY NDRAKTAEED LKALVDSAMA EVDMAEDATT KDGSGYENGM A
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.