Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
29762476
nucleus: 29762476 |
nucleus:
26228564
|
gfp PMID:
29762476
doi
The Collaborative Center Innovation of Henan Food Crops, Henan Agricultural University, Zhengzhou 450002, China. dongjie@henau.edu.cn., The Collaborative Center Innovation of Henan Food Crops, Henan Agricultural University, Zhengzhou 450002, China. gaotian1211@henau.edu.cn., The Collaborative Center Innovation of Henan Food Crops, Henan Agricultural University, Zhengzhou 450002, China. shashayuan@henau.edu.cn., The National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China. guozhangkang@henau.edu.cn., The National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China. ligezi@henau.edu.cn., The National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450002, China. wangyonghua88@henau.edu.cn., The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China. gaotian1211@henau.edu.cn., The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China. guozhangkang@henau.edu.cn., The National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China. wangchuanren@henau.edu.cn.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G328000.1 | Wheat | nucleus | 99.57 | 99.57 |
| TraesCS3A01G334700.1 | Wheat | nucleus | 96.96 | 96.96 |
| HORVU3Hr1G079290.1 | Barley | nucleus | 95.65 | 95.65 |
| EES03779 | Sorghum | nucleus | 76.09 | 75.43 |
| Zm00001d012549_P001 | Maize | nucleus | 76.52 | 73.95 |
| GSMUA_Achr4P04810_001 | Banana | nucleus | 65.22 | 65.5 |
| GSMUA_Achr6P32500_001 | Banana | nucleus | 64.78 | 65.07 |
| KRH42233 | Soybean | nucleus | 63.04 | 63.32 |
| PGSC0003DMT400021078 | Potato | nucleus | 62.17 | 62.45 |
| VIT_08s0056g00160.t01 | Wine grape | nucleus | 61.3 | 61.57 |
| Solyc10g079430.1.1 | Tomato | nucleus | 60.87 | 61.14 |
| Bra014494.1-P | Field mustard | nucleus | 58.7 | 59.21 |
| CDY56997 | Canola | nucleus | 58.7 | 59.21 |
| Bra007528.1-P | Field mustard | nucleus | 57.83 | 58.33 |
| CDY58906 | Canola | nucleus | 57.83 | 58.33 |
| CDY41170 | Canola | nucleus | 57.83 | 58.33 |
| CDX71815 | Canola | mitochondrion, nucleus | 57.39 | 57.89 |
| Zm00001d041650_P001 | Maize | cytosol | 13.04 | 57.69 |
| AT3G60360.1 | Thale cress | nucleus | 56.96 | 57.46 |
| KRH58350 | Soybean | nucleus | 61.3 | 56.18 |
| Zm00001d050595_P001 | Maize | nucleus | 36.52 | 48.55 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G365600.1 | EnsemblPlantsGene:TraesCS3B01G365600 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009561 | GO:GO:0009987 | GO:GO:0032040 | InterPro:SSU_processome_Utp11 |
| ncoils:Coil | PANTHER:PTHR12838 | PFAM:PF03998 | PIRSF:PIRSF015952 | MapMan:17.1.3.2.1.13 | : |
Description
No Description!
Coordinates
chr3B:-:578283155..578286286
Molecular Weight (calculated)
27494.9 Da
IEP (calculated)
10.864
GRAVY (calculated)
-1.342
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLRNSIPR RAHKERAQPE SRKKYGLLEK HKDHILRARA YQRKEDFIRN LKEKASFKNP DEFYFKMINS KTVDGIHRPK PEANNKYTEE ERMLLKHKDM
101: GYIFQAVQSE RKKVERLSST LHSVDDKRSN KHIYFAEDRE EAKEIRSRIG QSSSTPQFGN IPSRIKRKTA SSYKELESRK ERVKNLEKLY ADMALQKELK
201: KPGRKRKLRE EEIVNSASQT VYKWRAQRKR
101: GYIFQAVQSE RKKVERLSST LHSVDDKRSN KHIYFAEDRE EAKEIRSRIG QSSSTPQFGN IPSRIKRKTA SSYKELESRK ERVKNLEKLY ADMALQKELK
201: KPGRKRKLRE EEIVNSASQT VYKWRAQRKR
001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
Arabidopsis Description
EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.