Factsheet for Bra007528.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001412.1-P
Bra002404.1-P
Bra006216.1-P
Bra006453.1-P
Bra006620.1-P
Bra006747.1-P
Bra008801.1-P
Bra009783.1-P
Bra011328.1-P
Bra012987.1-P
Bra013840.1-P
Bra019205.1-P
Bra019445.1-P
Bra020357.1-P
Bra020466.1-P
Bra026236.1-P
Bra034827.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60360.1	Bra001412.1-P	AT3G11590.1	21798944
AT3G60360.1	Bra034827.1-P	AT3G11590.1	21798944
AT3G60360.1	Bra019445.1-P	AT3G43230.1	21798944
AT3G60360.1	Bra026236.1-P	AT4G17220.1	21798944
AT3G60360.1	Bra006453.1-P	AT4G24840.1	21798944
AT3G60360.1	Bra013840.1-P	AT4G24840.1	21798944
AT3G60360.1	Bra019205.1-P	AT4G24840.1	21798944
AT3G60360.1	Bra011328.1-P	AT4G32190.1	21798944
AT3G60360.1	Bra006216.1-P	AT5G13810.1	21798944
AT3G60360.1	Bra008801.1-P	AT5G13810.1	21798944
AT3G60360.1	Bra002404.1-P	AT5G22310.1	21798944
AT3G60360.1	Bra006620.1-P	AT5G22310.1	21798944
AT3G60360.1	Bra009783.1-P	AT5G24660.1	21798944
AT3G60360.1	Bra020466.1-P	AT5G24660.1	21798944
AT3G60360.1	Bra006747.1-P	AT5G58720.1	21798944
AT3G60360.1	Bra020357.1-P	AT5G58720.1	21798944
AT3G60360.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41170	Canola	nucleus	100.0	100.0
Bra014494.1-P	Field mustard	nucleus	94.3	94.3
AT3G60360.1	Thale cress	nucleus	84.65	84.65
VIT_08s0056g00160.t01	Wine grape	nucleus	66.23	65.94
KRH42233	Soybean	nucleus	66.23	65.94
PGSC0003DMT400021078	Potato	nucleus	65.35	65.07
GSMUA_Achr6P32500_001	Banana	nucleus	64.91	64.63
Solyc10g079430.1.1	Tomato	nucleus	64.04	63.76
GSMUA_Achr4P04810_001	Banana	nucleus	63.6	63.32
EES03779	Sorghum	nucleus	60.96	59.91
KRH58350	Soybean	nucleus	65.35	59.36
HORVU3Hr1G079290.1	Barley	nucleus	59.21	58.7
TraesCS3A01G334700.1	Wheat	nucleus	59.21	58.7
Zm00001d012549_P001	Maize	nucleus	60.96	58.4
TraesCS3B01G365600.1	Wheat	nucleus	58.33	57.83
TraesCS3D01G328000.1	Wheat	nucleus	58.33	57.83
Zm00001d041650_P001	Maize	cytosol	10.96	48.08
Zm00001d050595_P001	Maize	nucleus	28.51	37.57

Protein Annotations

EnsemblPlants:Bra007528.1	EnsemblPlants:Bra007528.1-P	EnsemblPlantsGene:Bra007528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0032040	InterPro:SSU_processome_Utp11	ncoils:Coil	PANTHER:PTHR12838	PFAM:PF03998
PIRSF:PIRSF015952	SEG:seg	UniParc:UPI0002542FC7	UniProt:M4CTI5	MapMan:17.1.3.2.1.13	:

Description

AT3G60360 (E=1e-098) EDA14, UTP11 | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)

Coordinates

chrA09:-:29632310..29633697

Molecular Weight (calculated)

27372.1 Da

IEP (calculated)

10.555

GRAVY (calculated)

-1.302

Length

228 amino acids

Sequence
(BLAST)

001: MSSLRNAVPR PAHKERSQPQ VRKRFGLLEK HKDYVIRAKA YHQKEDIKKK LKQKAAFKNP DEFYFKMINS KTVDGVHRPK EEINKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTEEQPSRR HVYFAEDREE ARELELQAKN KTDISAMHIP KDIKKKMDRS YRDLEARKSR AKDLEKLYMD MSMQKELQKK
201: GRKRKLREDE ILNPNGKPVY KWKADRKR

Best Arabidopsis Sequence Match ( AT3G60360.1 )
(BLAST)

001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR

Arabidopsis Description

EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.