Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079430.1.1 | Tomato | nucleus | 97.38 | 97.38 |
| VIT_08s0056g00160.t01 | Wine grape | nucleus | 78.6 | 78.6 |
| KRH42233 | Soybean | nucleus | 72.93 | 72.93 |
| GSMUA_Achr4P04810_001 | Banana | nucleus | 72.05 | 72.05 |
| GSMUA_Achr6P32500_001 | Banana | nucleus | 71.62 | 71.62 |
| Bra014494.1-P | Field mustard | nucleus | 65.5 | 65.79 |
| CDY56997 | Canola | nucleus | 65.5 | 65.79 |
| CDY58906 | Canola | nucleus | 65.5 | 65.79 |
| KRH58350 | Soybean | nucleus | 72.05 | 65.74 |
| Bra007528.1-P | Field mustard | nucleus | 65.07 | 65.35 |
| CDY41170 | Canola | nucleus | 65.07 | 65.35 |
| EES03779 | Sorghum | nucleus | 65.94 | 65.09 |
| CDX71815 | Canola | mitochondrion, nucleus | 64.63 | 64.91 |
| Zm00001d012549_P001 | Maize | nucleus | 67.25 | 64.71 |
| HORVU3Hr1G079290.1 | Barley | nucleus | 63.32 | 63.04 |
| AT3G60360.1 | Thale cress | nucleus | 62.01 | 62.28 |
| TraesCS3B01G365600.1 | Wheat | nucleus | 62.45 | 62.17 |
| TraesCS3A01G334700.1 | Wheat | nucleus | 62.45 | 62.17 |
| TraesCS3D01G328000.1 | Wheat | nucleus | 62.01 | 61.74 |
| Zm00001d041650_P001 | Maize | cytosol | 10.92 | 48.08 |
| Zm00001d050595_P001 | Maize | nucleus | 27.51 | 36.42 |
Protein Annotations
| EntrezGene:102596114 | MapMan:17.1.3.2.1.13 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0032040 | UniProt:M1AEK5 | PFAM:PF03998 | EnsemblPlantsGene:PGSC0003DMG400008162 | PGSC:PGSC0003DMG400008162 |
| EnsemblPlants:PGSC0003DMT400021078 | PIRSF:PIRSF015952 | PANTHER:PTHR12838 | InterPro:SSU_processome_Utp11 | UniParc:UPI000296063B | RefSeq:XP_006351260.1 |
| SEG:seg | : | : | : | : | : |
Description
U3 small nucleolar RNA-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008162]
Coordinates
chr10:-:58378082..58383229
Molecular Weight (calculated)
27007.6 Da
IEP (calculated)
10.676
GRAVY (calculated)
-1.147
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFKNAIPR RAHKERAQPQ ARKKFGLLEK HKDYVVRATA FHKKEQALQK LKEKAAFRNP DEFYFKMVKT KTVDGVHKLE SQANKYTPEE LMLMKTQDIG
101: YILQKVQSEK KKIEKLTAML HSLDNQPSNK RVYYAEDREE AEELASKASE RSNLAASGNL PSSIRRKTAT SYRELEARKS RVRDLEKVYM DMAMQKELQK
201: SGRKRKLREE ELVNPTTKPV YKWRQERKR
101: YILQKVQSEK KKIEKLTAML HSLDNQPSNK RVYYAEDREE AEELASKASE RSNLAASGNL PSSIRRKTAT SYRELEARKS RVRDLEKVYM DMAMQKELQK
201: SGRKRKLREE ELVNPTTKPV YKWRQERKR
001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
Arabidopsis Description
EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.