Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 66.3 | 60.91 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 48.9 | 51.01 |
| Zm00001d016410_P006 | Maize | nucleus | 39.5 | 43.47 |
| KXG29764 | Sorghum | nucleus | 39.5 | 43.47 |
| KRH56658 | Soybean | nucleus | 43.65 | 43.29 |
| KRH03775 | Soybean | nucleus | 42.54 | 42.19 |
| CDX70900 | Canola | nucleus | 36.74 | 41.18 |
| Zm00001d053613_P001 | Maize | nucleus | 37.02 | 41.1 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 38.12 | 39.54 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 38.12 | 39.32 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 37.85 | 39.03 |
| AT5G19960.1 | Thale cress | cytosol | 36.19 | 38.87 |
| Bra020076.1-P | Field mustard | nucleus | 33.98 | 38.08 |
| CDY42320 | Canola | nucleus | 33.98 | 38.08 |
| CDY44955 | Canola | nucleus | 33.43 | 37.46 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 36.74 | 37.05 |
| CDX88867 | Canola | nucleus | 31.22 | 26.04 |
| Bra006526.1-P | Field mustard | nucleus | 30.39 | 25.06 |
| GSMUA_Achr10P... | Banana | nucleus | 12.71 | 16.08 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P08450_001 | EnsemblPlants:GSMUA_Achr7T08450_001 | EnsemblPlantsGene:GSMUA_Achr7G08450_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | ncoils:Coil | PANTHER:PTHR23147 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295AA35 | UniProt:M0TFT5 | MapMan:35.2 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G08450_001]
Coordinates
chr7:+:6301511..6309537
Molecular Weight (calculated)
42497.9 Da
IEP (calculated)
5.330
GRAVY (calculated)
-1.334
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLDDDKSIY VGGLPYDCTQ EDLRRAFDLY GAIVDVKIIN DRQVGGKCYG FVTFRNPRSA VDAIMDMNGR KIGGRAVRVN EVHTRGGRPN FQRENFHRNA
101: DRDDDWERGR ERERDHIQDR DHYLDRSNER FRDRDRQRER ETDFERGRDF DRARAHSLDR DRDREDDDHE RAWERNRDRE ADRDMDWNGD RDLDKNKDHD
201: IDKELDKEQQ PRQRHGGAGF SDRQSRDLSS NSSDDYRGQV KEQLELSIQR REELQKELTI VGEKVEEKQQ LVSDLQKKSQ KLEDALVAAK KLTSQRHSML
301: MQLRACFIRA QDFAERLKSS EQELQSLADA AMFEVDMGED AGARDGPSYA NGQIIGGKML ER
101: DRDDDWERGR ERERDHIQDR DHYLDRSNER FRDRDRQRER ETDFERGRDF DRARAHSLDR DRDREDDDHE RAWERNRDRE ADRDMDWNGD RDLDKNKDHD
201: IDKELDKEQQ PRQRHGGAGF SDRQSRDLSS NSSDDYRGQV KEQLELSIQR REELQKELTI VGEKVEEKQQ LVSDLQKKSQ KLEDALVAAK KLTSQRHSML
301: MQLRACFIRA QDFAERLKSS EQELQSLADA AMFEVDMGED AGARDGPSYA NGQIIGGKML ER
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.