Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29764 | Sorghum | nucleus | 96.05 | 96.05 |
| Zm00001d053613_P001 | Maize | nucleus | 89.36 | 90.18 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 72.04 | 67.52 |
| TraesCS6B01G205800.2 | Wheat | nucleus | 71.73 | 67.24 |
| TraesCS6A01G178400.1 | Wheat | nucleus | 69.6 | 65.62 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 70.82 | 64.9 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 42.86 | 40.63 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 43.47 | 39.5 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 44.07 | 36.8 |
| CDY42320 | Canola | nucleus | 34.35 | 34.98 |
| Bra020076.1-P | Field mustard | nucleus | 34.04 | 34.67 |
| CDY44955 | Canola | nucleus | 33.74 | 34.37 |
| CDX70900 | Canola | nucleus | 33.74 | 34.37 |
| KRH56658 | Soybean | nucleus | 37.39 | 33.7 |
| AT5G19960.1 | Thale cress | cytosol | 34.35 | 33.53 |
| KRH03775 | Soybean | nucleus | 35.56 | 32.05 |
| Bra006526.1-P | Field mustard | nucleus | 29.48 | 22.1 |
| CDX88867 | Canola | nucleus | 28.57 | 21.66 |
| Zm00001d034710_P003 | Maize | nucleus | 13.37 | 14.06 |
Protein Annotations
| EntrezGene:100303796 | Gene3D:3.30.70.330 | MapMan:35.2 | UniProt:A0A1D6H7I7 | ProteinID:AQK70723.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000221D1B6 | EnsemblPlantsGene:Zm00001d016410 | EnsemblPlants:Zm00001d016410_P006 | EnsemblPlants:Zm00001d016410_T006 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr5:-:161322076..161325897
Molecular Weight (calculated)
38458.3 Da
IEP (calculated)
6.162
GRAVY (calculated)
-1.284
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDEVNSVY VGGLPYEANE EMLRDAFGYY GTIVSVKVIN DHAVKGKCYG FVTFTHPRAA EQAIAGMDGK KLGNRIVRVN EVRTRGPRDF GRDGFRRDPR
101: RYGRDPYWDR RDRERSYDRE RDPYHDRDSD RSREHDRERD YEHGGFNREI DYPMDRDREG DERRPREHDR TAEMHNVDSD NDKDKEHVSR KRFSRPKGRD
201: SRDLSSSSDG LQNDGKHQLD KTIQMREDLE NEVNQIKDKI SGKEQHIADL QKKAQKLEDE LVAARKVSSE RQLAVTDLYK HFLQLQDYND RVKTAEQRLQ
301: SLVDAALVEL DMAEDATTRD GSMYENGVL
101: RYGRDPYWDR RDRERSYDRE RDPYHDRDSD RSREHDRERD YEHGGFNREI DYPMDRDREG DERRPREHDR TAEMHNVDSD NDKDKEHVSR KRFSRPKGRD
201: SRDLSSSSDG LQNDGKHQLD KTIQMREDLE NEVNQIKDKI SGKEQHIADL QKKAQKLEDE LVAARKVSSE RQLAVTDLYK HFLQLQDYND RVKTAEQRLQ
301: SLVDAALVEL DMAEDATTRD GSMYENGVL
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.