Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95307 | Sorghum | nucleus | 91.54 | 90.88 |
| Zm00001d028055_P001 | Maize | nucleus | 86.76 | 86.76 |
| Os03t0206900-01 | Rice | nucleus | 80.15 | 80.15 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 79.41 | 78.26 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 79.04 | 77.9 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 78.68 | 77.82 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 73.53 | 77.52 |
| Bra014221.1-P | Field mustard | nucleus | 31.25 | 38.46 |
| CDY32837 | Canola | nucleus | 30.51 | 37.05 |
| CDY16531 | Canola | nucleus | 30.15 | 36.61 |
| CDY61552 | Canola | nucleus | 31.62 | 35.98 |
| Bra039652.1-P | Field mustard | nucleus | 31.99 | 35.8 |
| CDY20854 | Canola | nucleus | 31.62 | 35.54 |
| AT1G49850.1 | Thale cress | nucleus | 31.25 | 34.0 |
| KRG91075 | Soybean | nucleus | 29.41 | 33.9 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 33.09 | 33.46 |
| Solyc01g107290.2.1 | Tomato | nucleus | 33.09 | 32.61 |
| KRH35698 | Soybean | nucleus | 29.41 | 32.52 |
| PGSC0003DMT400066172 | Potato | nucleus | 33.46 | 31.6 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 31.62 | 30.94 |
| Zm00001d030843_P001 | Maize | nucleus | 22.06 | 24.49 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:AQL08922.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K7VKQ6 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF293 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000220E983 | EnsemblPlantsGene:Zm00001d048134 | EnsemblPlants:Zm00001d048134_P001 |
| EnsemblPlants:Zm00001d048134_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Probable E3 ubiquitin-protein ligase RHY1A
Coordinates
chr9:-:150639576..150642158
Molecular Weight (calculated)
30795.9 Da
IEP (calculated)
8.777
GRAVY (calculated)
-0.832
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFIA RRAARGARLS DPDPDPDPHP VALRDQHGLG GRRQRRGCRP RRQLDAAGDV RQHLHTGAPP PRRRGSYTDQ ILSYIDNNNF GDSASRRNRL
101: DRLMFRTNER LPGAVLQAQA RVLERLRGIS LGSSASRPSI SLDEFSANDV FRIIDFRNRE TWHEANRPHS SSFHLGSESD EERPNVSSVN SNRSTGLSKA
201: AFLRLQIEIF EASKDDNREA SPECSICLDG FYDGDELIRL HCGHRFHSTC LEPWVRKCSD CPYCRTNIRS QS
101: DRLMFRTNER LPGAVLQAQA RVLERLRGIS LGSSASRPSI SLDEFSANDV FRIIDFRNRE TWHEANRPHS SSFHLGSESD EERPNVSSVN SNRSTGLSKA
201: AFLRLQIEIF EASKDDNREA SPECSICLDG FYDGDELIRL HCGHRFHSTC LEPWVRKCSD CPYCRTNIRS QS
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Arabidopsis Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.