Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066172 | Potato | nucleus | 78.62 | 75.35 |
| CDY32837 | Canola | nucleus | 35.14 | 43.3 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 43.48 | 43.17 |
| Bra014221.1-P | Field mustard | nucleus | 34.42 | 42.99 |
| CDY16531 | Canola | nucleus | 34.42 | 42.41 |
| AT1G49850.1 | Thale cress | nucleus | 37.68 | 41.6 |
| CDY61552 | Canola | nucleus | 35.87 | 41.42 |
| KRG91075 | Soybean | nucleus | 35.14 | 41.1 |
| CDY20854 | Canola | nucleus | 35.87 | 40.91 |
| Bra039652.1-P | Field mustard | nucleus | 35.51 | 40.33 |
| KRH35698 | Soybean | nucleus | 35.51 | 39.84 |
| Os03t0206900-01 | Rice | nucleus | 34.42 | 34.93 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 34.42 | 34.55 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 32.25 | 34.5 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 34.06 | 34.06 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 34.06 | 34.06 |
| EER95307 | Sorghum | nucleus | 33.33 | 33.58 |
| Zm00001d028055_P001 | Maize | nucleus | 32.61 | 33.09 |
| Zm00001d048134_P001 | Maize | nucleus | 32.61 | 33.09 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 28.26 | 29.0 |
| Os12t0580700-01 | Rice | nucleus | 23.19 | 24.81 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 22.46 | 24.51 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 24.28 | 24.36 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 23.19 | 23.53 |
| KXG23810 | Sorghum | cytosol | 22.1 | 23.37 |
| Zm00001d030843_P001 | Maize | nucleus | 20.29 | 22.86 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 22.1 | 22.26 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 20.65 | 21.76 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 20.65 | 21.43 |
| TraesCS4A01G237400.1 | Wheat | mitochondrion, nucleus | 19.57 | 20.45 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 17.03 | 17.87 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 21.01 | 16.91 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K4B2U6 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF293 | SMART:SM00184 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc01g107290.2 |
| EnsemblPlants:Solyc01g107290.2.1 | UniParc:UPI0002767C7B | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Probable E3 ubiquitin-protein ligase RHY1A [Source:Projected from Arabidopsis thaliana (AT1G49850) UniProtKB/Swiss-Prot;Acc:Q852U6]
Coordinates
chr1:+:94882525..94887099
Molecular Weight (calculated)
31099.1 Da
IEP (calculated)
8.137
GRAVY (calculated)
-0.821
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFFT RRSRYGRSDL ELGSDLSTIR NSHNHSVRNR RHHHHSHQPT GNNTRRDRVD VNDCEPLRRS PPHRLRRWPP DRDSVSLDSA NSQAASGDTN
101: HATNNNNRIR DRVGTSGSER LPGTVLLARE RLLQRLRGVS ISGNRRSYGI RTSSHRNNFT FEDDFGLADA SDGEADSSLW LAGTTPSPDH LIWLRENKRP
201: PGLSQEAMDL LHIGVYSNSD KEEARAVIDC SICLDAFLEG DKLACLPCGH RYHPCCLEPW VRTCGDCPYC RAAIHV
101: HATNNNNRIR DRVGTSGSER LPGTVLLARE RLLQRLRGVS ISGNRRSYGI RTSSHRNNFT FEDDFGLADA SDGEADSSLW LAGTTPSPDH LIWLRENKRP
201: PGLSQEAMDL LHIGVYSNSD KEEARAVIDC SICLDAFLEG DKLACLPCGH RYHPCCLEPW VRTCGDCPYC RAAIHV
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Arabidopsis Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.