Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23810 | Sorghum | cytosol | 52.65 | 49.43 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 44.49 | 43.08 |
| Os12t0580700-01 | Rice | nucleus | 44.08 | 41.86 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 46.53 | 41.61 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 46.12 | 41.54 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 46.12 | 41.09 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 28.57 | 25.18 |
| Bra014221.1-P | Field mustard | nucleus | 21.63 | 23.98 |
| CDY16531 | Canola | nucleus | 21.63 | 23.66 |
| CDY61552 | Canola | nucleus | 22.86 | 23.43 |
| KRG91075 | Soybean | nucleus | 22.45 | 23.31 |
| CDY32837 | Canola | nucleus | 21.22 | 23.21 |
| Bra039652.1-P | Field mustard | nucleus | 22.86 | 23.05 |
| Zm00001d028055_P001 | Maize | nucleus | 25.31 | 22.79 |
| KRH35698 | Soybean | nucleus | 22.45 | 22.36 |
| Zm00001d048134_P001 | Maize | nucleus | 24.49 | 22.06 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 23.67 | 21.8 |
| CDY20854 | Canola | nucleus | 21.22 | 21.49 |
| PGSC0003DMT400066172 | Potato | nucleus | 24.9 | 21.18 |
| Solyc01g107290.2.1 | Tomato | nucleus | 22.86 | 20.29 |
| AT1G49850.1 | Thale cress | nucleus | 18.78 | 18.4 |
Protein Annotations
| EntrezGene:100192938 | Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:B4FD68 | EMBL:BT035056 | EMBL:EU968588 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:ONM01599.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | SMART:SM00184 | SMART:SM01197 |
| SUPFAM:SSF57850 | UniParc:UPI00017B6649 | EnsemblPlantsGene:Zm00001d030843 | EnsemblPlants:Zm00001d030843_P001 | EnsemblPlants:Zm00001d030843_T001 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Probable E3 ubiquitin-protein ligase RHY1A
Coordinates
chr1:-:162767578..162769472
Molecular Weight (calculated)
26172.9 Da
IEP (calculated)
10.577
GRAVY (calculated)
-0.617
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIASKLVYF QRRPAPAPPD DPGPEPPDPR RPRRRRRSGS LSSSHQKPEH DVPGHQRDHA AAAKPPGPVG KAAGLLHTAS SAGLHHRSTS GSDHGRLPDA
101: VQQARERLLQ RLGSVDLVLA AGRRHKTWPL QTLWAGAGGL ARPVVDASSG GGQTSCFQFQ FQPGEREPIP VFPKPAASAV QEAEDGRAAP ADAASDCSIC
201: LERCGAGGGL TQLRCGHVFH SACLQRWLRS RADCPYCRAT VRARS
101: VQQARERLLQ RLGSVDLVLA AGRRHKTWPL QTLWAGAGGL ARPVVDASSG GGQTSCFQFQ FQPGEREPIP VFPKPAASAV QEAEDGRAAP ADAASDCSIC
201: LERCGAGGGL TQLRCGHVFH SACLQRWLRS RADCPYCRAT VRARS
001: MNDPIPKPIV SVQVQAVKVS TNSIFLIVNT IKDEILINPV TGHRAETSTP LSYKSLPINF SLPSCSHHHI QSLLHDQLHS DDNWLCDHLV PKISTAAINA
101: GFMNNGVELT VGVTVTYQYV HVEETSSKES RMVRLGSMKA EELKSFNMET DSCSICLQSL VSSSKTGPTR MSCSHVFHSS CLVEWLKRKN TCPMCRTVLY
201: DR
101: GFMNNGVELT VGVTVTYQYV HVEETSSKES RMVRLGSMKA EELKSFNMET DSCSICLQSL VSSSKTGPTR MSCSHVFHSS CLVEWLKRKN TCPMCRTVLY
201: DR
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ79]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.