Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35698 | Soybean | nucleus | 86.44 | 82.93 |
| Bra014221.1-P | Field mustard | nucleus | 41.53 | 44.34 |
| CDY16531 | Canola | nucleus | 41.53 | 43.75 |
| CDY32837 | Canola | nucleus | 41.53 | 43.75 |
| CDY61552 | Canola | nucleus | 40.68 | 40.17 |
| Bra039652.1-P | Field mustard | nucleus | 39.83 | 38.68 |
| CDY20854 | Canola | nucleus | 39.41 | 38.43 |
| AT1G49850.1 | Thale cress | nucleus | 38.14 | 36.0 |
| Solyc01g107290.2.1 | Tomato | nucleus | 41.1 | 35.14 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 41.1 | 34.89 |
| PGSC0003DMT400066172 | Potato | nucleus | 39.41 | 32.29 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 32.63 | 29.84 |
| Zm00001d028055_P001 | Maize | nucleus | 34.32 | 29.78 |
| Zm00001d048134_P001 | Maize | nucleus | 33.9 | 29.41 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 33.47 | 28.73 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 33.47 | 28.62 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 33.47 | 28.62 |
| EER95307 | Sorghum | nucleus | 33.05 | 28.47 |
| Os03t0206900-01 | Rice | nucleus | 32.2 | 27.94 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 31.36 | 27.51 |
| KXG23810 | Sorghum | cytosol | 27.54 | 24.9 |
| Os12t0580700-01 | Rice | nucleus | 26.27 | 24.03 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 26.69 | 23.68 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 26.69 | 22.91 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 26.27 | 22.79 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 24.15 | 22.53 |
| Zm00001d030843_P001 | Maize | nucleus | 23.31 | 22.45 |
| TraesCS4A01G237400.1 | Wheat | mitochondrion, nucleus | 25.0 | 22.35 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 24.58 | 22.14 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 25.42 | 21.9 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 22.88 | 20.53 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 25.42 | 17.49 |
Protein Annotations
| EntrezGene:100814695 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02012660 | EnsemblPlantsGene:GLYMA_20G131600 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | UniProt:I1NG08 |
| InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRG91075 | ProteinID:KRG91075 | ProteinID:KRG91075.1 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF293 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00023DC779 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:37221827..37224663
Molecular Weight (calculated)
26856.4 Da
IEP (calculated)
6.592
GRAVY (calculated)
-0.661
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFHS RRHRLGRSAL DLGLDTELNA ADSLRRHYHL RRLRHHPERA SDRIDGRYRR SFASESVDSE ENVRSSLRGS DSERLPVGVV LARARLLQRL
101: RGEPLSTNRQ YDRDSFGEDR ESELSNEDPT RASLVSDLTS QMARSQFLQE LNTKPPGLTQ EALDCLHQEV FSSSGNEIGL ESRVLQDCSI CLESFTDGDE
201: LIRLPCGHKF HSVCLDPWIR CCGDCPYCRR SIVVIN
101: RGEPLSTNRQ YDRDSFGEDR ESELSNEDPT RASLVSDLTS QMARSQFLQE LNTKPPGLTQ EALDCLHQEV FSSSGNEIGL ESRVLQDCSI CLESFTDGDE
201: LIRLPCGHKF HSVCLDPWIR CCGDCPYCRR SIVVIN
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Arabidopsis Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.