Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH51187 | Soybean | cytosol | 74.29 | 73.12 |
KRH36588 | Soybean | cytosol | 69.15 | 68.3 |
KRH11576 | Soybean | cytosol | 68.79 | 67.95 |
PGSC0003DMT400034592 | Potato | cytosol | 30.32 | 65.02 |
VIT_00s0194g00260.t01 | Wine grape | cytosol | 59.22 | 57.19 |
Solyc04g015010.2.1 | Tomato | cytosol | 47.16 | 54.62 |
Bra026236.1-P | Field mustard | cytosol | 47.16 | 53.52 |
CDY42967 | Canola | cytosol, nucleus, plasma membrane | 47.34 | 53.4 |
CDY35590 | Canola | cytosol | 48.58 | 53.31 |
PGSC0003DMT400038827 | Potato | cytosol | 47.7 | 53.27 |
AT4G17220.1 | Thale cress | cytosol | 48.4 | 53.22 |
CDX90483 | Canola | cytosol | 46.81 | 52.49 |
Solyc11g012660.1.1 | Tomato | nucleus | 51.95 | 52.32 |
CDY09638 | Canola | cytosol | 46.45 | 52.09 |
GSMUA_Achr7P26720_001 | Banana | cytosol | 46.1 | 50.49 |
KRH49658 | Soybean | cytosol | 46.63 | 43.04 |
KRH70354 | Soybean | endoplasmic reticulum | 46.63 | 42.97 |
KRG95100 | Soybean | nucleus | 43.09 | 41.4 |
KRH41720 | Soybean | cytosol | 45.04 | 41.23 |
KRH60419 | Soybean | cytosol, plastid | 44.68 | 40.91 |
EER95273 | Sorghum | cytosol | 37.06 | 40.9 |
KRH66768 | Soybean | mitochondrion | 35.64 | 40.85 |
Zm00001d028219_P001 | Maize | cytosol | 36.17 | 39.92 |
Os03t0215700-01 | Rice | cytosol | 35.99 | 39.42 |
TraesCS4B01G245400.1 | Wheat | nucleus | 36.35 | 38.61 |
HORVU4Hr1G067630.12 | Barley | nucleus | 34.4 | 36.95 |
TraesCS4A01G078900.2 | Wheat | nucleus | 34.57 | 36.72 |
TraesCS4D01G244000.1 | Wheat | nucleus | 33.51 | 35.59 |
Protein Annotations
MapMan:35.1 | UniProt:A0A0R0F6M3 | EMBL:ACUP02010293 | ncoils:Coil | EnsemblPlantsGene:GLYMA_17G006600 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007010 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 |
GO:GO:0016043 | EnsemblPlants:KRH01966 | ProteinID:KRH01966 | ProteinID:KRH01966.1 | InterPro:MAP70 | PFAM:PF07058 |
PANTHER:PTHR31246 | PANTHER:PTHR31246:SF5 | UniParc:UPI0006EDF5B3 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr17:-:599077..602371
Molecular Weight (calculated)
64247.0 Da
IEP (calculated)
9.560
GRAVY (calculated)
-0.772
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSCEEKYGE KLTLVQPDPV ALEINRLQNQ LKEKDKELAT CQGEMKALRS TEALKDKAIE ELRNGASKLD ERLRVTEDHL KQKNLEIKKL TDEKKDALAS
101: QYAAEATLRR VHANQKDEDF VPIESVIAPL EAEIKMYRNE ITALQEDKKA LEQLTKSKES ALLEAERILR SALERALVVE EVEKKLLEKN HRQKILEVEK
201: LSKTIQQLEE VILASGATAN AVRDCQRQIS ELQEEKRTLE RELARVKVSA NRIANVVANE WKDENDKVMP VRQWLEERRI MQIQQLKDKL AISERTARAE
301: SQLKDKLKLR LRTLEEGLKH FSSYPITLNV SYASPKAEKS NILAFLTTNG GLRKRSTSQP RASSVGSSLF QTPNIKNNTD IVAGNLKLGS PTKKYGSTEN
401: MLKKGMWALR SKVANNGEKE NEMQVKTDMT LNRYTDESEA TEIKTIVNLD EDAESKKPNG SSRDDVVSGF LYDKLQKEVI NLRKSCEIKD SSLLAKDEEI
501: KMLIKKVDVL TKAMEVEWKK MKREAAAREK EASSTKSDDN RKKRSGNSSK RFFNFTFCSV ANNC
101: QYAAEATLRR VHANQKDEDF VPIESVIAPL EAEIKMYRNE ITALQEDKKA LEQLTKSKES ALLEAERILR SALERALVVE EVEKKLLEKN HRQKILEVEK
201: LSKTIQQLEE VILASGATAN AVRDCQRQIS ELQEEKRTLE RELARVKVSA NRIANVVANE WKDENDKVMP VRQWLEERRI MQIQQLKDKL AISERTARAE
301: SQLKDKLKLR LRTLEEGLKH FSSYPITLNV SYASPKAEKS NILAFLTTNG GLRKRSTSQP RASSVGSSLF QTPNIKNNTD IVAGNLKLGS PTKKYGSTEN
401: MLKKGMWALR SKVANNGEKE NEMQVKTDMT LNRYTDESEA TEIKTIVNLD EDAESKKPNG SSRDDVVSGF LYDKLQKEVI NLRKSCEIKD SSLLAKDEEI
501: KMLIKKVDVL TKAMEVEWKK MKREAAAREK EASSTKSDDN RKKRSGNSSK RFFNFTFCSV ANNC
001: MTAAENPFVS DTSSLQSQLK EKEKELLAAK AEVEALRTNE ELKDRVFKEL RENVRKLEEK LGATENQVDQ KELERKKLEE EKEDALAAQD AAEEALRRVY
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ
Arabidopsis Description
MAP70.5Microtubule-associated protein 70-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.