CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25284
KRH30384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	KRH25284	AT5G22310.1	21798944
AT5G52010.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15394	Soybean	nucleus	72.11	82.28
GSMUA_Achr8P18570_001	Banana	nucleus	49.21	69.52
PGSC0003DMT400003844	Potato	nucleus	52.37	53.35
CDY32605	Canola	nucleus	53.16	52.33
CDY38889	Canola	nucleus	52.63	51.55
AT5G52010.1	Thale cress	plastid	53.68	51.52
Bra029148.1-P	Field mustard	nucleus, plastid	52.37	51.29
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	56.32	48.2
Zm00001d036297_P001	Maize	plastid	43.68	44.86
EER87918	Sorghum	plastid	44.21	42.42
Os06t0166200-01	Rice	plastid	44.74	41.46
TraesCS7B01G028600.1	Wheat	nucleus, plastid	41.84	39.45
TraesCS7A01G128700.1	Wheat	nucleus, plastid	42.11	39.12
TraesCS7D01G127500.1	Wheat	nucleus, plastid	41.84	38.97
KRG97366	Soybean	mitochondrion	32.89	35.11
KRH31550	Soybean	mitochondrion	31.84	30.79

Protein Annotations

EMBL:ACUP02010765	EnsemblPlants:KRH05651	EnsemblPlantsGene:GLYMA_17G239900	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157
ProteinID:KRH05651	ProteinID:KRH05651.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI0006ED9757	UniProt:A0A0R0FQX1
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:39545941..39547083

Molecular Weight (calculated)

43876.0 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.769

Length

380 amino acids

Sequence
(BLAST)

001: MKNSLFLLHN ANTIHFNLHS QITLPSIPLT TITTTKPFPH NRHFPRIQCC SNNNNNNSIE IDMVKNSQGI YAPKASKVVV LWDLDNKPPR GPPYDVAISL
101: KTLAARFGDL VDFSAYANRH AFVHLPQWVL QQRRDRKNLD ILERKGIITP PEPYTCGVCG RKCKTHLDLK KHFKQLHQRE RQKKLNRLKS LKGKKRHRFK
201: ERFLRGNHKY DDAARTLVVP KVGYGLAAEL RRAGVFVKTV QDKPQAADWA LKRQMVHSMS RGIDWLFLVS DDSDFSEMLR RAREADLGTV VVGDWDRALG
301: RHADLWVPWS GVENGEVGDL VPKRRRENSR RREQGEEHGF GLEDDDDDDG EDEELGQEYM LLYDDDDDDE GEEEDGLYIF

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.