Factsheet for TraesCS7B01G028600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G127500.1	Wheat	nucleus, plastid	98.26	97.06
TraesCS7A01G128700.1	Wheat	nucleus, plastid	95.78	94.38
Os06t0166200-01	Rice	plastid	74.94	73.66
EER87918	Sorghum	plastid	71.96	73.23
Zm00001d036297_P001	Maize	plastid	64.02	69.73
GSMUA_Achr8P18570_001	Banana	nucleus	43.92	65.8
CDY38889	Canola	nucleus	46.4	48.2
KRH15394	Soybean	nucleus	39.7	48.05
Bra029148.1-P	Field mustard	nucleus, plastid	45.91	47.68
CDY32605	Canola	nucleus	45.66	47.67
PGSC0003DMT400003844	Potato	nucleus	42.68	46.11
AT5G52010.1	Thale cress	plastid	45.16	45.96
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	48.39	43.92
KRH05651	Soybean	nucleus	39.45	41.84
TraesCS2B01G346300.1	Wheat	mitochondrion	17.87	21.95

Protein Annotations

EnsemblPlants:TraesCS7B01G028600.1	EnsemblPlantsGene:TraesCS7B01G028600	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	TIGR:cd06167	MapMan:15.5.15

Description

No Description!

Coordinates

chr7B:+:27058099..27059550

Molecular Weight (calculated)

45209.1 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.625

Length

403 amino acids

Sequence
(BLAST)

001: MPPPLSFLHP PPNPPVLHPS PFNHRAPHRI SLRADPPLRA AAAENPYSAA PTAADVEMFR GGDGVWTARS PTVVVLWDLD NKPPRGPPFE AATSLREAAS
101: LLGRVDSVSA FANRHAFTHL PAWVSADRRE RRALDRAERT GAAAPPVPYS CAVCGRRFPT RPDLARHFRQ LHERERNKKL GRLRSLKGKK RQKFRERYIS
201: NNTKYQDAAR ELLTPKVGYG LDSELRRAGV HVRTVPDKPQ AADQALKRQV KHAIACGVDW VVLVSDDSDF TDTVRNARAA ALRMVVVGDG CRALGKVADI
301: WLPWDSVQNG EVDEEMMRSG KVPEFRYEEH DEQDDDDEFI VDWDTNELDD VVDDIVTSRT KVFGATKMSA FAEEDIVDGI LGLRHKEDDM LWSSDDEDED
401: GYL

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.