Factsheet for GSMUA_Achr8P18570_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT5G52010.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15394	Soybean	nucleus	69.89	56.46
Zm00001d036297_P001	Maize	plastid	69.14	50.27
PGSC0003DMT400003844	Potato	nucleus	68.4	49.33
KRH05651	Soybean	nucleus	69.52	49.21
CDY32605	Canola	nucleus	70.26	48.96
CDY38889	Canola	nucleus	69.14	47.94
Bra029148.1-P	Field mustard	nucleus, plastid	68.77	47.68
EER87918	Sorghum	plastid	69.52	47.22
AT5G52010.1	Thale cress	plastid	68.03	46.21
Os06t0166200-01	Rice	plastid	68.03	44.63
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	73.23	44.37
TraesCS7B01G028600.1	Wheat	nucleus, plastid	65.8	43.92
TraesCS7D01G127500.1	Wheat	nucleus, plastid	65.8	43.38
TraesCS7A01G128700.1	Wheat	nucleus, plastid	65.43	43.03
GSMUA_Achr6P03610_001	Banana	mitochondrion	44.98	35.48

Protein Annotations

EnsemblPlants:GSMUA_Achr8P18570_001	EnsemblPlants:GSMUA_Achr8T18570_001	EnsemblPlantsGene:GSMUA_Achr8G18570_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:NYN_limkain-b1	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFAM:PF01936
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	UniParc:UPI000296BAF4	UniProt:M0TRL0
MapMan:15.5.15	:	:	:	:	:

Description

ZOS6-01 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G18570_001]

Coordinates

chr8:-:22962197..22963103

Molecular Weight (calculated)

30962.5 Da

IEP (calculated)

10.947

GRAVY (calculated)

-0.555

Length

269 amino acids

Sequence
(BLAST)

001: MFCGRDGVWT ARQQTVVVLW DLDNKPPRGP PYEAAVALRR AAELFGRVVE VSAYANRHAF VHLPQWVLEQ RRERHRLNVL ERKGLVAPAE SYTCGVCGRK
101: CRTNLDLKKH FRQLHVRERQ KKLDRMRSLK GKKRQRYRER FIAGNHKYED AARTLLTPKT GYGLASELRR AGVFVRTVAD KPQAADSAVK RQMLHSMTRG
201: IDWLFLVSDD SDFSDMIRRA READLRTVVV GDGRTALGRQ ADIWVPWVRV ENGEVGKELL QSGMVNCRI

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.