CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70996
CDX88802
CDX92367
CDY65427
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	CDY65427	AT4G25920.1	21798944
AT5G52010.1	CDX70996	AT5G22310.1	21798944
AT5G52010.1	CDX88802	AT5G22310.1	21798944
AT5G52010.1	CDX92367	AT5G22310.1	21798944
AT5G52010.1	CDY67997	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029148.1-P	Field mustard	nucleus, plastid	98.97	98.97
CDY32605	Canola	nucleus	94.07	94.56
AT5G52010.1	Thale cress	plastid	82.99	81.31
GSMUA_Achr8P18570_001	Banana	nucleus	47.94	69.14
KRH15394	Soybean	nucleus	50.52	58.86
PGSC0003DMT400003844	Potato	nucleus	52.06	54.16
KRH05651	Soybean	nucleus	51.55	52.63
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	57.99	50.68
Zm00001d036297_P001	Maize	plastid	45.88	48.11
EER87918	Sorghum	plastid	48.71	47.73
Os06t0166200-01	Rice	plastid	49.48	46.83
TraesCS7A01G128700.1	Wheat	nucleus, plastid	48.97	46.45
TraesCS7B01G028600.1	Wheat	nucleus, plastid	48.2	46.4
TraesCS7D01G127500.1	Wheat	nucleus, plastid	48.45	46.08
CDX90824	Canola	mitochondrion, nucleus, plastid	30.41	37.34
CDY21264	Canola	mitochondrion, nucleus, plastid	30.15	34.51

Protein Annotations

EnsemblPlants:CDY38889	EnsemblPlantsGene:GSBRNA2T00066736001	Gene3D:3.30.160.60	GO:A0A078HND4	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157
ProteinID:CDY38889	ProteinID:CDY38889.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI0004EE1778	UniProt:A0A078HND4
MapMan:15.5.15	:	:	:	:	:

Description

BnaA03g12900DBnaA03g12900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HND4]

Coordinates

chrLK032434:-:198003..199716

Molecular Weight (calculated)

44737.8 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.774

Length

388 amino acids

Sequence
(BLAST)

001: MSLFCNSIDT LYPKPYLPHK SHFFSLSGTK LRNLSFAGFP HLRIKSYLKS ASSSEIDMVR NKEGVFAPKE KKVVVLWDLD NKPPRGPPFE AATELRRVAE
101: HLGRVVEISA YANRHAFIHL PHWVVEERRS RRSLDFAERK GEVVPEEPYV CGVCGRKCRT NLDLKKHFKQ LHERERQKKV NRMRSLKGKK RQKFKERYVS
201: GNEKYNEAAR RLLTPKVGYG LEAELRRAGV YVKTVEDKPQ AADWAVKRQI QHSMTRGIDW LVLVSDDKDF SDMLRKAREA DLGTVVVSDR DGVLGRQADL
301: WVPWMGVENG EIGEKDLVPE KRRRFDEEGE EEEEGDGLFS LAYDEDEREE MRVESDGFGR FSVSAFSEDE GDFALSDSDD DSDDELSF

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.