CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21264	Canola	mitochondrion, nucleus, plastid	90.82	84.66
Bra000767.1-P	Field mustard	mitochondrion	94.62	84.23
AT4G12240.1	Thale cress	mitochondrion	73.1	63.46
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	22.78	54.14
PGSC0003DMT400002602	Potato	cytosol	56.33	49.31
KRG97366	Soybean	mitochondrion	53.48	47.47
GSMUA_Achr6P03610_001	Banana	mitochondrion	50.0	46.33
KRH31550	Soybean	mitochondrion	55.7	44.78
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	12.34	38.24
Os04t0464600-01	Rice	mitochondrion	33.86	32.33
TraesCS2B01G346300.1	Wheat	mitochondrion	32.91	31.71
TraesCS2A01G335600.1	Wheat	mitochondrion	32.91	31.61
Zm00001d003392_P001	Maize	mitochondrion	32.91	31.52
TraesCS2D01G327200.1	Wheat	nucleus	32.59	31.31
CDY32605	Canola	nucleus	37.66	30.83
CDY38889	Canola	nucleus	37.34	30.41
OQU81721	Sorghum	mitochondrion	34.81	17.03

Protein Annotations

EnsemblPlants:CDX90824	EnsemblPlantsGene:GSBRNA2T00151534001	Gene3D:3.30.160.60	GO:A0A078DQS5	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:NYN_limkain-b1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR35744
PANTHER:PTHR35744:SF2	PFAM:PF01936	PFscan:PS50157	ProteinID:CDX90824	ProteinID:CDX90824.1	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF57667	UniParc:UPI0004EF17ED	MapMan:15.5.15	:	:

Description

BnaA03g25040D

Coordinates

chrLK031864:+:711385..712452

Molecular Weight (calculated)

36117.3 Da

IEP (calculated)

9.760

GRAVY (calculated)

-0.624

Length

316 amino acids

Sequence
(BLAST)

001: MFSRFLHRIQ SSKPQITSLN STKPFTSLNP KPRTRVAVFW DLDNKPPASH PPHDAAVKLR TAASSFGSVK LMVAYANRHA FSYKTGLSKP AEPYFCGVCG
101: RRFYANEKLI AHFRQIHETE NQKRVRQIES AKGHQRVRLV AKYSMKMEKY KRAARNVLTP KEGYGLAEEL TRGGFWVKMV SDKPEAADRA LKEHMVDVMD
201: RREAECLVLV SDDSGFAEVL WEAKERCLRT VVIGDLSEGK LKRVADVAYS WKEVVMGKAK KEVEKVVGKW RDRDVLKTLE WCYDPVLEKE RAEMGDGGDW
301: WEMDDEDGAG SSRPCR

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.