CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31550	Soybean	mitochondrion	84.83	76.84
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	23.88	63.91
CDX90824	Canola	mitochondrion, nucleus, plastid	47.47	53.48
PGSC0003DMT400002602	Potato	cytosol	53.93	53.19
AT4G12240.1	Thale cress	mitochondrion	53.93	52.75
Bra000767.1-P	Field mustard	mitochondrion	50.28	50.42
CDY21264	Canola	mitochondrion, nucleus, plastid	47.19	49.56
GSMUA_Achr6P03610_001	Banana	mitochondrion	46.07	48.09
KRH15394	Soybean	nucleus	34.27	36.64
KRH05651	Soybean	nucleus	35.11	32.89
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	8.71	30.39
TraesCS2A01G335600.1	Wheat	mitochondrion	27.25	29.48
TraesCS2D01G327200.1	Wheat	nucleus	27.25	29.48
Os04t0464600-01	Rice	mitochondrion	26.97	29.0
TraesCS2B01G346300.1	Wheat	mitochondrion	26.69	28.96
Zm00001d003392_P001	Maize	mitochondrion	25.0	26.97
OQU81721	Sorghum	mitochondrion	26.69	14.71

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02010794	EnsemblPlantsGene:GLYMA_18G003600	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	UniProt:K7MP67	EnsemblPlants:KRG97366	ProteinID:KRG97366	ProteinID:KRG97366.1
InterPro:NYN_limkain-b1	PFAM:PF01936	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000233F581	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:301361..302431

Molecular Weight (calculated)

41105.0 Da

IEP (calculated)

9.340

GRAVY (calculated)

-0.627

Length

356 amino acids

Sequence
(BLAST)

001: MVSFTSYFIY RRAENPLQIL KFRCTFFFSP ETTSWQTYGA LRYCHSGSEC GKNPKLTPNE KPNRVGLFWD LDNKPPNSIP PYEVANKLRI AASSFGVVRY
101: MAAYANSHTF SHVPQGVREI RKEKELLYRL ENKGVIKPNQ PYRCKVCGRK FHTNDKLVNH FKQLHEREHA KRMNQIESSR GSRRVKLVAK YSMKMEKYKK
201: AASDILTPKV GYGLADELRR AGFWVQTVSD KPQAADQALQ SHIVDIMDHR RVECVVLVSD DSDFVDVINE AKMRCLKTVV IGDIDDGFLK RTADTAFSWE
301: EILMGKAKKQ AVSVVKNWKD RDILKRLEWT YNPDEDKNNF SLDDAITEAS EDDNID

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.