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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:
  • plastid 3
  • mitochondrion 4
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90824 Canola mitochondrion, nucleus, plastid 84.66 90.82
AT4G12240.1 Thale cress mitochondrion 73.75 68.68
VIT_02s0241g00170.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 21.53 54.89
PGSC0003DMT400002602 Potato cytosol 53.1 49.86
GSMUA_Achr6P03610_001 Banana mitochondrion 48.97 48.68
KRG97366 Soybean mitochondrion 49.56 47.19
KRH31550 Soybean mitochondrion 53.98 46.56
HORVU2Hr1G081060.1 Barley cytosol, nucleus 11.21 37.25
Zm00001d003392_P001 Maize mitochondrion 30.97 31.82
Os04t0464600-01 Rice mitochondrion 30.97 31.72
TraesCS2B01G346300.1 Wheat mitochondrion 30.09 31.1
TraesCS2A01G335600.1 Wheat mitochondrion 30.09 31.0
TraesCS2D01G327200.1 Wheat nucleus 29.79 30.7
CDY32605 Canola nucleus 34.81 30.57
CDY38889 Canola nucleus 34.51 30.15
OQU81721 Sorghum mitochondrion 32.15 16.87
Protein Annotations
EnsemblPlants:CDY21264EnsemblPlantsGene:GSBRNA2T00015584001Gene3D:3.30.160.60GO:A0A078G788GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:NYN_limkain-b1InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR35744
PANTHER:PTHR35744:SF2PFAM:PF01936PFscan:PS50157ProteinID:CDY21264ProteinID:CDY21264.1ScanProsite:PS00028
SEG:segSUPFAM:SSF57667UniParc:UPI0004EE789EUniProt:A0A078G788MapMan:15.5.15:
Description
BnaC03g29480DBnaC03g29480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G788]
Coordinates
chrLK032119:+:14010..15182
Molecular Weight (calculated)
38606.9 Da
IEP (calculated)
8.267
GRAVY (calculated)
-0.648
Length
339 amino acids
Sequence
(BLAST)
001: MFSRFLHRIR SSKTPITSLN SIKPFTSLNP KPPTRVAVFW DLDNKPPASH PPHDAAVKLR TAASSFGSVK LMVAYANRHA FSYNTGLAKP AEPYFCGVCD
101: RRFYANEKLI AHFRQIHETE NQKRVRQIEA AKGHQRVRLV AKYSMKMEKY KRAARNVLTP KEGYGLADEL KRGGFWVKMV SDKPEAADRA LKEHMVDVMD
201: RREAECLVLV SDDSGFAEVL WEAKERCLRT VVIGDLSEGK LKRVADVAYS WKEVVMGKAK KEVEKVVGKW RDRDVLKKLE WSYDPVLEKE RGFCCGDWDY
301: GFDSDGDDDE VENGAEMGDG GDWWEMDDED GAGSSRPCR
Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)
001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR
Arabidopsis Description
Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.