CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003392_P001	Maize	mitochondrion	43.19	84.55
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	12.54	79.41
Os04t0464600-01	Rice	mitochondrion	36.69	71.6
TraesCS2D01G327200.1	Wheat	nucleus	34.52	67.78
TraesCS2A01G335600.1	Wheat	mitochondrion	33.9	66.57
TraesCS2B01G346300.1	Wheat	mitochondrion	33.28	65.55
GSMUA_Achr6P03610_001	Banana	mitochondrion	20.28	38.42
CDX90824	Canola	mitochondrion, nucleus, plastid	17.03	34.81
CDY21264	Canola	mitochondrion, nucleus, plastid	16.87	32.15
Bra000767.1-P	Field mustard	mitochondrion	17.34	31.55
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	6.04	29.32
AT4G12240.1	Thale cress	mitochondrion	16.1	28.57
PGSC0003DMT400002602	Potato	cytosol	15.33	27.42
KRG97366	Soybean	mitochondrion	14.71	26.69
KRH31550	Soybean	mitochondrion	15.94	26.21
EER87918	Sorghum	plastid	12.23	19.95

Protein Annotations

EnsemblPlants:OQU81721	EnsemblPlantsGene:SORBI_3006G109850	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	PFscan:PS50157	ProteinID:OQU81721	ProteinID:OQU81721.1
ScanProsite:PS00028	SEG:seg	UniParc:UPI000B8BADAD	UniProt:A0A1Z5RDZ4	MapMan:15.5.15	:

Description

hypothetical protein

Coordinates

chr6:+:47880780..47883536

Molecular Weight (calculated)

69757.2 Da

IEP (calculated)

7.467

GRAVY (calculated)

-0.541

Length

646 amino acids

Sequence
(BLAST)

001: MPWRQIVILP RATSSLMLPP LSPLQRRLLA AGPKLLAPRF FRSFSSATAP AARKPTTAVA VLWDLAASRP PSTIPLYDAA VRLHLAATSF GRLRLSAAFV
101: HPSHRLPSRA AGSAATTHLC RVCGRRFRAR DALVRHFDAI HAREHAKRVA RIDSARGGRR VRLAAALSLK LSKYEKAARE LTAGAGTASP SDELGRAGVR
201: VELSRTPAAS LREHAQLVLD EGSARCLMLV SDHEELTPLL RVARERGVRS VVVGGESGLA RWADVGFSWA EVIAGKARKA APSVSGKWRD GDVLKGLEWR
301: YEEDDDEEEV VFEDSDDDGV EELARKAKGK PWWKLDSDDE DSSVGEVQTK CAVAARFRPA RSKNASIPSH SAIMALSSPL RITGAKKSHD PVPVTNASVS
401: AVATGRGGRH APPCCRAIHR SATAHAPCSA KKAVTSPRDV VEHDLVHGPG HEERREHARR GAEAGAHGAV HAGPEHAGDH EVPPPAPEVA EGGGEVRPVE
501: LRLQLRAQQR AGERRGGREE ELQHQVHVRA VEHGHGVRGH PRPVAPDGDE RGEERRLGRV RQQESGRERG AGCLLLLLLL LVLGLVPDLD GQRGARDEAH
601: EREGGVERPV SRGEEEELEA AEPDEEEGGD GAEVDGGEGE GEDWEE

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.