Factsheet for Zm00001d003392_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	22.73	73.53
Os04t0464600-01	Rice	mitochondrion	71.82	71.6
TraesCS2D01G327200.1	Wheat	nucleus	65.76	65.96
TraesCS2A01G335600.1	Wheat	mitochondrion	65.15	65.35
TraesCS2B01G346300.1	Wheat	mitochondrion	63.64	64.02
OQU81721	Sorghum	mitochondrion	84.55	43.19
GSMUA_Achr6P03610_001	Banana	mitochondrion	37.58	36.36
CDX90824	Canola	mitochondrion, nucleus, plastid	31.52	32.91
CDY21264	Canola	mitochondrion, nucleus, plastid	31.82	30.97
Bra000767.1-P	Field mustard	mitochondrion	32.42	30.14
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	11.82	29.32
AT4G12240.1	Thale cress	mitochondrion	30.91	28.02
PGSC0003DMT400002602	Potato	cytosol	28.79	26.32
KRG97366	Soybean	mitochondrion	26.97	25.0
KRH31550	Soybean	mitochondrion	29.09	24.43
Zm00001d036297_P001	Maize	plastid	22.73	20.27

Protein Annotations

MapMan:15.5.15	UniProt:A0A1D6E915	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0008152	GO:GO:0050660	GO:GO:0055114	InterPro:IPR013087	ProteinID:ONM16885.1
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	UniParc:UPI0008423AC9	EnsemblPlantsGene:Zm00001d003392
EnsemblPlants:Zm00001d003392_P001	EnsemblPlants:Zm00001d003392_T001	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

zinc finger (C2H2 type) family protein

Coordinates

chr2:-:42617018..42618010

Molecular Weight (calculated)

35746.6 Da

IEP (calculated)

9.800

GRAVY (calculated)

-0.260

Length

330 amino acids

Sequence
(BLAST)

001: MLSLSPLSHL QRRLLAADPK FLAPPLFRSF SRATAPAARK PTTAVAVLWD LAASHPPSTL PLYDAAVRLH LAATSFGRPR LSMAFLHPSH RLPAPAASAA
101: TTHLCRVCGR RFRARDALLR HFDAIHAREH AKRLARIDSA RGGRRVHLAA ALSLKLSKYE KAARELTAGA GTASPSDEIG RAGVRVELSR TPAASLREHA
201: QLVLDEGSAR CLMLVSGHEE LASLLRVARE RGVRSVVVGG ESGLARWADV GFSWAEVIAG KARCAAPSVS GKWRDLDVLK GLEWRYEDDD DEEEIVFEDG
301: DGDGVDELAR KGKGKPWWKL DSGDEDSSAG

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.