Factsheet for Zm00001d036297_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d025208_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT5G52010.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT5G52010.1	Zm00001d025208_P002	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87918	Sorghum	plastid	90.54	84.6
GSMUA_Achr8P18570_001	Banana	nucleus	50.27	69.14
Os06t0166200-01	Rice	plastid	73.51	66.34
TraesCS7B01G028600.1	Wheat	nucleus, plastid	69.73	64.02
TraesCS7A01G128700.1	Wheat	nucleus, plastid	70.27	63.57
TraesCS7D01G127500.1	Wheat	nucleus, plastid	70.0	63.48
KRH15394	Soybean	nucleus	44.05	48.95
PGSC0003DMT400003844	Potato	nucleus	47.3	46.92
CDY38889	Canola	nucleus	48.11	45.88
Bra029148.1-P	Field mustard	nucleus, plastid	47.84	45.62
CDY32605	Canola	nucleus	47.57	45.6
AT5G52010.1	Thale cress	plastid	47.84	44.7
KRH05651	Soybean	nucleus	44.86	43.68
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	51.89	43.24
Zm00001d003392_P001	Maize	mitochondrion	20.27	22.73

Protein Annotations

EnsemblPlants:Zm00001d036297_P001	EnsemblPlants:Zm00001d036297_T001	EnsemblPlantsGene:Zm00001d036297	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3
PFscan:PS50157	ProteinID:AQK80565.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0008438947	UniProt:A0A1D6LLJ8	MapMan:15.5.15	:	:	:

Description

Zinc finger%2C C2H2 type family protein isoform 1%3B Zinc finger%2C C2H2 type family protein isoform 2

Coordinates

chr6:+:82503281..82506008

Molecular Weight (calculated)

41236.9 Da

IEP (calculated)

10.078

GRAVY (calculated)

-0.450

Length

370 amino acids

Sequence
(BLAST)

001: MPHVLSFLHL HLPLNTAPLH SFRVHRTRHS HPHLSLRTRR ASATAAAAEA ENPSASADVE MVRGRDGVWT ARSPTVVVLW DLDNKPPRGP PFPAATALIG
101: AASLLGRVVS ISAFANRHAF SHLPGWVTAE RRARRALDRS ERAGVVVPSV PYSCSVCGRR FPTRPDLTRH FRQLHERERN KKLSRLRSLK GKKRQKFRER
201: FITGNTKYED AARELLTPKV GYGLASELRR AGVHVRTVPD KPQAADHALK RQVKHSVACG VDWLVLVSDD SDFTDTVRNA RAADLRTVVV GDGCRALGKV
301: ADIWLPWDRV ENGEVDEEML RSCTFSEYRE DQGTERDGQF IGDWDAGDFD DVVDDIVGTR TSLLGATTIC

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.