Factsheet for TraesCS7D01G127500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT5G52010.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G028600.1	Wheat	nucleus, plastid	97.06	98.26
TraesCS7A01G128700.1	Wheat	nucleus, plastid	97.06	96.82
Os06t0166200-01	Rice	plastid	74.75	74.39
EER87918	Sorghum	plastid	71.57	73.74
Zm00001d036297_P001	Maize	plastid	63.48	70.0
GSMUA_Achr8P18570_001	Banana	nucleus	43.38	65.8
CDY38889	Canola	nucleus	46.08	48.45
KRH15394	Soybean	nucleus	39.22	48.05
Bra029148.1-P	Field mustard	nucleus, plastid	45.59	47.94
CDY32605	Canola	nucleus	45.34	47.93
PGSC0003DMT400003844	Potato	nucleus	42.16	46.11
AT5G52010.1	Thale cress	plastid	44.61	45.96
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	48.04	44.14
KRH05651	Soybean	nucleus	38.97	41.84
TraesCS2D01G327200.1	Wheat	nucleus	19.12	23.71

Protein Annotations

EnsemblPlants:TraesCS7D01G127500.1	EnsemblPlantsGene:TraesCS7D01G127500	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	TIGR:cd06167	MapMan:15.5.15

Description

No Description!

Coordinates

chr7D:+:79955305..79956774

Molecular Weight (calculated)

45654.5 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.596

Length

408 amino acids

Sequence
(BLAST)

001: MPPPLSFLHP PPNPPVLHPS PFHHRAPHRL SLRADPPLRA AAATAAAAEN PYSAAPTAAD VEMFRGGDGV WTARSPTVVV LWDLDNKPPR GPPFEAATSL
101: REAASLLGRV DSVSAFANRH AFTHLPAWVS ADRRERRALD RAERTGAAAP PVPYSCAVCG RRFPTRPDLA RHFRQLHERE RNKKLGRLRS LKGKKRQKFR
201: ERYISNNTKY QDAARELLTP KVGYGLDSEL RRAGVHVRTV PDKPQAADQA LKRQVKHAIA CGVDWVVLVS DDSDFTDTVR NARAAALRMV VVGDGCRALG
301: KVADIWLPWD SVQNGEVDEE MMRSGKVPEF RYEEHDEQYD DDEFIVDWDT NELDDVVDDI VTSRTKVFGS TTMSAFAEED IVDGILGLRH KEDDMLWSSD
401: DEDEDGYL

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.