CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25284
KRH30384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	KRH25284	AT5G22310.1	21798944
AT5G52010.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05651	Soybean	nucleus	82.28	72.11
GSMUA_Achr8P18570_001	Banana	nucleus	56.46	69.89
PGSC0003DMT400003844	Potato	nucleus	61.26	54.69
CDY32605	Canola	nucleus	60.06	51.81
CDY38889	Canola	nucleus	58.86	50.52
Bra029148.1-P	Field mustard	nucleus, plastid	58.56	50.26
AT5G52010.1	Thale cress	plastid	59.76	50.25
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	62.76	47.07
Zm00001d036297_P001	Maize	plastid	48.95	44.05
EER87918	Sorghum	plastid	49.85	41.92
Os06t0166200-01	Rice	plastid	50.75	41.22
TraesCS7B01G028600.1	Wheat	nucleus, plastid	48.05	39.7
TraesCS7D01G127500.1	Wheat	nucleus, plastid	48.05	39.22
TraesCS7A01G128700.1	Wheat	nucleus, plastid	48.05	39.12
KRG97366	Soybean	mitochondrion	36.64	34.27
KRH31550	Soybean	mitochondrion	36.04	30.53

Protein Annotations

EMBL:ACUP02008585	EnsemblPlants:KRH15394	EnsemblPlantsGene:GLYMA_14G084900	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157
ProteinID:KRH15394	ProteinID:KRH15394.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI0006EE0686	UniProt:A0A0R0GHQ7
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:7480720..7481721

Molecular Weight (calculated)

38640.5 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.828

Length

333 amino acids

Sequence
(BLAST)

001: MVKNSQGIYA PKNDKVVVLW DLDNKPPRGA PYDAAVSLKT LAARFGHLVD FSAYANRHAF VHLPQWVLHQ RRHRRNLDIL ERKGVITPPE PYTCGVCGRK
101: CKTHLDLKKH FKQLHQRERQ KKLNRLKSLK GKKRHRFKER FLRGNHKYDD AARTLVVPKV GYGLAAELRR AGVFVKTVQD KPQAADWALK RQMVHSMSRG
201: IDWLFLVSDD SDFSEMLRRA READLGTVVV GDWDKALGRH ADLWVPWSGV ENGEVGDLLP KRRRENSRRR EQGEEHGFGL EDDDGGVFLN EDEELGQEFM
301: LLYSEDEDED VDVEDYYDDD DDDEEEEDGF YIL

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.