Factsheet for VIT_18s0001g10130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18570_001	Banana	nucleus	44.37	73.23
KRH15394	Soybean	nucleus	47.07	62.76
PGSC0003DMT400003844	Potato	nucleus	51.58	61.39
CDY32605	Canola	nucleus	51.58	59.33
CDY38889	Canola	nucleus	50.68	57.99
Bra029148.1-P	Field mustard	nucleus, plastid	50.45	57.73
AT5G52010.1	Thale cress	plastid	51.13	57.32
KRH05651	Soybean	nucleus	48.2	56.32
EER87918	Sorghum	plastid	46.4	52.02
Zm00001d036297_P001	Maize	plastid	43.24	51.89
Os06t0166200-01	Rice	plastid	45.27	49.02
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	14.64	48.87
TraesCS7B01G028600.1	Wheat	nucleus, plastid	43.92	48.39
TraesCS7D01G127500.1	Wheat	nucleus, plastid	44.14	48.04
TraesCS7A01G128700.1	Wheat	nucleus, plastid	43.47	47.19

Protein Annotations

EntrezGene:100248940	wikigene:100248940	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB45816	ProteinID:CCB45816.1
ncoils:Coil	UniProt:F6H1A7	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	EntrezGene:LOC100248940	wikigene:LOC100248940	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744
PANTHER:PTHR35744:SF3	UniParc:UPI00019852E2	ArrayExpress:VIT_18s0001g10130	EnsemblPlantsGene:VIT_18s0001g10130	EnsemblPlants:VIT_18s0001g10130.t01	RefSeq:XP_002282947
RefSeq:XP_002282947.1	RefSeq:XP_002282947.3	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:8481200..8483315

Molecular Weight (calculated)

50723.1 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.650

Length

444 amino acids

Sequence
(BLAST)

001: MLKDEGGVIV MMNSLPPFCN AKLTLIPLTS PSSLFLRKTK YSLSLNTETG ISLISVKPSQ NLNPSKWRIN VRASAADEID MVRNKDGVYT AKRKKVVVLW
101: DLDNKPPRGP PYAAATALIE LAQRFGDIVD ISAYANRHAF VHLPQWVLEE RHERRRMDFL ERKGITTPAE PYICGVCGRK CRTNLDLKKH FKQLHERERQ
201: KKLNRMRSLK GKKRQRYKEK FISGNTKYEE AARSLITPKV GYGLASELRR AGVFVKTVED KPQAADWALK RQMQHSMSRG IDWLVLVSDD SDFADMLRRA
301: RESNLGTVVV GDWHRALGRH ADLWVPWTGV ENREVTEEDL RPRNRRRSDF EDRDDGLFSV THFNGDGIGG GILDGLVDEL VVNRSECNGV NISAFSEGEE
401: DWIGEELDKR GRVQFQAGQS LDEDDDYILW DSEDEEAEEE DGYL

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.