Factsheet for VIT_02s0241g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002602	Potato	cytosol	75.19	27.7
AT4G12240.1	Thale cress	mitochondrion	68.42	25.0
Bra000767.1-P	Field mustard	mitochondrion	63.91	23.94
KRG97366	Soybean	mitochondrion	63.91	23.88
CDX90824	Canola	mitochondrion, nucleus, plastid	54.14	22.78
KRH31550	Soybean	mitochondrion	65.41	22.14
GSMUA_Achr6P03610_001	Banana	mitochondrion	56.39	21.99
CDY21264	Canola	mitochondrion, nucleus, plastid	54.89	21.53
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	48.87	14.64
Zm00001d003392_P001	Maize	mitochondrion	29.32	11.82
Os04t0464600-01	Rice	mitochondrion	29.32	11.78
TraesCS2A01G335600.1	Wheat	mitochondrion	27.82	11.25
TraesCS2D01G327200.1	Wheat	nucleus	27.82	11.25
TraesCS2B01G346300.1	Wheat	mitochondrion	27.07	10.98
OQU81721	Sorghum	mitochondrion	29.32	6.04
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100261883	wikigene:100261883	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB47506	ProteinID:CCB47506.1
UniProt:F6H5L7	EMBL:FN595238	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR013087	EntrezGene:LOC100261883
wikigene:LOC100261883	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	SUPFAM:SSF57667
UniParc:UPI000210A387	ArrayExpress:VIT_02s0241g00170	EnsemblPlantsGene:VIT_02s0241g00170	EnsemblPlants:VIT_02s0241g00170.t01	RefSeq:XP_002266759	RefSeq:XP_002266759.2
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4784357..4787437

Molecular Weight (calculated)

15604.9 Da

IEP (calculated)

10.991

GRAVY (calculated)

-0.743

Length

133 amino acids

Sequence
(BLAST)

001: MVAYANRHAF SYVPSAVREQ RKERKLLNHL ENRGVVARVE PYLCRVCGRR FYNNEKLINH FKQIHEREQA KRLNQIESAR GKRRVKLVGK FAMKMDKYRN
101: AARDVLTPKV GYGLGDELKR AGYWGFFISS QSS

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.