Factsheet for GSMUA_Achr6P03610_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	21.99	56.39
CDX90824	Canola	mitochondrion, nucleus, plastid	46.33	50.0
CDY21264	Canola	mitochondrion, nucleus, plastid	48.68	48.97
PGSC0003DMT400002602	Potato	cytosol	51.61	48.75
Bra000767.1-P	Field mustard	mitochondrion	50.44	48.45
AT4G12240.1	Thale cress	mitochondrion	49.27	46.15
KRG97366	Soybean	mitochondrion	48.09	46.07
GSMUA_Achr8P18570_001	Banana	nucleus	35.48	44.98
KRH31550	Soybean	mitochondrion	49.85	43.26
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	12.61	42.16
Os04t0464600-01	Rice	mitochondrion	37.54	38.67
Zm00001d003392_P001	Maize	mitochondrion	36.36	37.58
TraesCS2B01G346300.1	Wheat	mitochondrion	36.07	37.5
TraesCS2D01G327200.1	Wheat	nucleus	35.78	37.08
TraesCS2A01G335600.1	Wheat	mitochondrion	35.48	36.78
OQU81721	Sorghum	mitochondrion	38.42	20.28

Protein Annotations

EnsemblPlants:GSMUA_Achr6P03610_001	EnsemblPlants:GSMUA_Achr6T03610_001	EnsemblPlantsGene:GSMUA_Achr6G03610_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR013087
InterPro:NYN_limkain-b1	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	PFAM:PF01936	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	UniParc:UPI000296DF59	UniProt:M0T3V9	MapMan:15.5.15	:

Description

Putative ZOS4-07 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03610_001]

Coordinates

chr6:-:2475486..2477787

Molecular Weight (calculated)

38377.8 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.523

Length

341 amino acids

Sequence
(BLAST)

001: MAFSPCRLLH LVRRHRTLAT AASSSRAVAV FWDLDNKPPN TIPPYDAAVR LHLAAASFGP LRFSVAYANH HAFRHLPAPV RAARAERRAA DHLEAAKPSR
101: VPSYLCRVCG RRFFAHAKLV NHFRQIHERE QEKRLRRIDS VTGGRRVRLV AALSLKMEKY KKAARELLTP EVGYGLADEL RRAGVVVRTV DDRPEAADRA
201: LREHMVETMD RGKVGCLVLV SDDSGFLGVM REARMRCLKT VVVGDEGDGA LKRYADSALS WKDVVSGKAK KEAASAVGRW KDRDLLKKLE WRHMPEEEEG
301: ESDIFDDDSD AGDEEDGCLG LVGERDKKPW WKLNSDSNDL H

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.