Factsheet for TraesCS2D01G327200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G335600.1	Wheat	mitochondrion	96.96	96.96
TraesCS2B01G346300.1	Wheat	mitochondrion	95.14	95.43
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	29.18	94.12
Os04t0464600-01	Rice	mitochondrion	73.56	73.11
Zm00001d003392_P001	Maize	mitochondrion	65.96	65.76
GSMUA_Achr6P03610_001	Banana	mitochondrion	37.08	35.78
OQU81721	Sorghum	mitochondrion	67.78	34.52
CDX90824	Canola	mitochondrion, nucleus, plastid	31.31	32.59
CDY21264	Canola	mitochondrion, nucleus, plastid	30.7	29.79
Bra000767.1-P	Field mustard	mitochondrion	31.61	29.3
AT4G12240.1	Thale cress	mitochondrion	31.0	28.02
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	11.25	27.82
KRG97366	Soybean	mitochondrion	29.48	27.25
PGSC0003DMT400002602	Potato	cytosol	28.27	25.76
KRH31550	Soybean	mitochondrion	30.7	25.7
TraesCS7D01G127500.1	Wheat	nucleus, plastid	23.71	19.12

Protein Annotations

EnsemblPlants:TraesCS2D01G327200.1	EnsemblPlantsGene:TraesCS2D01G327200	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR013087
InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
TIGR:cd06167	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:420558490..420559479

Molecular Weight (calculated)

36338.9 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.538

Length

329 amino acids

Sequence
(BLAST)

001: MSRPLHNLRR RLLSSTLRVL PSPSHRLSTT SSTPATRAPT TPVAVLWDLA ASRPPSKLPL YDSAVRLHLA ASSFGRLRFS AAFVHPCHRL PDPDPSADAT
101: NLCRVCGRKF RARDALLRHF DTIHTREHAK RLERIESSRG DRRVRLAASL SLKLSKYTKA ARELTAGVNP GSPADELRRA RVHAELSRYP STALRDRAQE
201: VLDDGSVGCL MLVSGREELS PLLRLAKEKG VRSVVVGGES GLARWADTGF TWAEVIAGKA RKAAPSMSGK WRDRDVLKGL EWRYEDDDEE EVVFEEDGDG
301: DGSEELAGSA NGKPWWKLES DGEDSSLCT

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.