Factsheet for Bra000767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90824	Canola	mitochondrion, nucleus, plastid	84.23	94.62
AT4G12240.1	Thale cress	mitochondrion	74.08	72.25
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	23.94	63.91
PGSC0003DMT400002602	Potato	cytosol	53.8	52.91
GSMUA_Achr6P03610_001	Banana	mitochondrion	48.45	50.44
KRG97366	Soybean	mitochondrion	50.42	50.28
KRH31550	Soybean	mitochondrion	54.08	48.85
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	10.7	37.25
Bra029148.1-P	Field mustard	nucleus, plastid	36.06	32.99
Os04t0464600-01	Rice	mitochondrion	30.42	32.63
Zm00001d003392_P001	Maize	mitochondrion	30.14	32.42
TraesCS2B01G346300.1	Wheat	mitochondrion	29.58	32.01
TraesCS2A01G335600.1	Wheat	mitochondrion	29.58	31.91
TraesCS2D01G327200.1	Wheat	nucleus	29.3	31.61
OQU81721	Sorghum	mitochondrion	31.55	17.34

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra000767	EnsemblPlants:Bra000767.1	EnsemblPlants:Bra000767.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR013087	UniProt:M4C989	InterPro:NYN_limkain-b1	PFAM:PF01936	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	UniParc:UPI000253FCF2	InterPro:Znf_C2H2_type	SEG:seg

Description

AT4G12240 (E=2e-142) | zinc finger (C2H2 type) family protein

Coordinates

chrA03:+:12947434..12948501

Molecular Weight (calculated)

40767.6 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.683

Length

355 amino acids

Sequence
(BLAST)

001: MFSRFLHRIR SSKPQITSLN STKPFTSLNP KPRTRVAVFW DLDNKPPASH PPHDAAVKLR TAASSFGSVK LMVAYANRHA FSYVPLQVRE ERKYRKLLNQ
101: LEKTGLSKPA ERYFCGVCGR RFYANEKLIA HFRQIHETEN QKRVRQIESA KGHQRVRLVA KYSMKMEKYK RAARNVLTPK EGYGLAEELT RGGFWVKMVS
201: DKPEAADRAL KEHMVDVMDR REAECLVLVS DDSGFAEVLW EAKERCLRTV VIGDLSEGKL KRVADVAYSW KEVVMGKAKK EVEKVVGKWR DRDVLKTLEW
301: CYDPVLEKER GYACGDWDYG FDSDDEVESG AEMGDGGDWW EMDDEDGAGS SRPCR

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.