Factsheet for Bra029148.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002404.1-P
Bra006620.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	Bra002404.1-P	AT5G22310.1	21798944
AT5G52010.1	Bra006620.1-P	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38889	Canola	nucleus	98.97	98.97
AT5G52010.1	Thale cress	plastid	82.99	81.31
GSMUA_Achr8P18570_001	Banana	nucleus	47.68	68.77
KRH15394	Soybean	nucleus	50.26	58.56
PGSC0003DMT400003844	Potato	nucleus	51.8	53.89
KRH05651	Soybean	nucleus	51.29	52.37
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	57.73	50.45
Zm00001d036297_P001	Maize	plastid	45.62	47.84
EER87918	Sorghum	plastid	48.45	47.47
Os06t0166200-01	Rice	plastid	49.23	46.59
TraesCS7A01G128700.1	Wheat	nucleus, plastid	48.45	45.97
TraesCS7B01G028600.1	Wheat	nucleus, plastid	47.68	45.91
TraesCS7D01G127500.1	Wheat	nucleus, plastid	47.94	45.59
Bra000767.1-P	Field mustard	mitochondrion	32.99	36.06

Protein Annotations

EnsemblPlants:Bra029148.1	EnsemblPlants:Bra029148.1-P	EnsemblPlantsGene:Bra029148	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	UniParc:UPI00025400E0	UniProt:M4EK31	MapMan:15.5.15	:

Description

AT5G52010 (E=2e-182) | zinc finger (C2H2 type) family protein

Coordinates

chrA03:+:6573533..6574699

Molecular Weight (calculated)

44701.8 Da

IEP (calculated)

6.688

GRAVY (calculated)

-0.761

Length

388 amino acids

Sequence
(BLAST)

001: MSLFCNSIDT LYPKPYLPHK SHFFPLSDTK LRNLSFAGFP HLRIKSCLKS ASSSEIDMVR NKEGVFAPKE KKVVVLWDLD NKPPRGPPFE AATELRRVAE
101: HLGRVVEISA YANRHAFIHL PHWVVEERRS RRSLDFAERK GEVVPEEPYV CGVCGRKCRT NLDLKKHFKQ LHERERQKKV NRMRSLKGKK RQKFKERYVS
201: GNEKYNEAAR RLLTPKVGYG LEAELRRAGV YVKTVEDKPQ AADWAVKRQI QHSMTRGIAW LVLVSDDKDF SDMLRKAREA DLGTVVVSDR DGVLGRQADL
301: WVPWMGVENG EIGEKDLVPE KRRRFDEEGE EEEEGDGLFS LAYDEDEREE MRVESDGFGR FSVSAFSEDE GDFALSDSDD DSDDELSF

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.