Factsheet for PGSC0003DMT400003844

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015076
PGSC0003DMT400067737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT5G52010.1	PGSC0003DMT400067737	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18570_001	Banana	nucleus	49.33	68.4
KRH15394	Soybean	nucleus	54.69	61.26
CDY32605	Canola	nucleus	54.96	53.11
KRH05651	Soybean	nucleus	53.35	52.37
AT5G52010.1	Thale cress	plastid	55.5	52.27
CDY38889	Canola	nucleus	54.16	52.06
Bra029148.1-P	Field mustard	nucleus, plastid	53.89	51.8
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	61.39	51.58
Zm00001d036297_P001	Maize	plastid	46.92	47.3
EER87918	Sorghum	plastid	47.72	44.95
Os06t0166200-01	Rice	plastid	47.72	43.41
TraesCS7B01G028600.1	Wheat	nucleus, plastid	46.11	42.68
TraesCS7D01G127500.1	Wheat	nucleus, plastid	46.11	42.16
TraesCS7A01G128700.1	Wheat	nucleus, plastid	46.11	42.05
PGSC0003DMT400002602	Potato	cytosol	32.71	33.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400003844	EnsemblPlantsGene:PGSC0003DMG400001519	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
InterPro:Znf_C2H2_type	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	PFscan:PS50157	PGSC:PGSC0003DMG400001519	ScanProsite:PS00028
SEG:seg	UniParc:UPI000295C3F5	UniProt:M0ZME3	MapMan:15.5.15	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001519]

Coordinates

chr2:+:38492749..38494592

Molecular Weight (calculated)

43129.8 Da

IEP (calculated)

5.224

GRAVY (calculated)

-0.802

Length

373 amino acids

Sequence
(BLAST)

001: MERTKQGLYT AKPKKVVILW DLDNKPPRGP PYEAAMSLKR VAQCFGEVVD MSAYANRHAF IHLPQWVVEE RRERRHLDVL ERKGVVTPSE LYICSVCGRK
101: CKTHMDLKKH FKQLHERERE KKLSRMRSLK GKKRQRFKER FVDGNYKYIE AAKSLITPKV GYGLASELRR AGVYVKTVAD KPQAADWALK KQMQHSMSRG
201: IDWLFLISDD SDFCDMLRRA KEANLGTVVV GDWDRALGRH ADLWVPWNGV ENGEITEKDL VLKSERRRES WDRSNAQFSV SEFNGGIREE GTSLGSLMDD
301: IVEKLESSGT RISAFSEGEE DEEVEELDEE DWLRARLDQR SDDEYNTEDS IVSDEEEGDY LLDSEDEDTG EIL

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.