Factsheet for PGSC0003DMT400002602

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0241g00170.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	27.7	75.19
CDX90824	Canola	mitochondrion, nucleus, plastid	49.31	56.33
AT4G12240.1	Thale cress	mitochondrion	55.68	55.22
KRG97366	Soybean	mitochondrion	53.19	53.93
Bra000767.1-P	Field mustard	mitochondrion	52.91	53.8
CDY21264	Canola	mitochondrion, nucleus, plastid	49.86	53.1
KRH31550	Soybean	mitochondrion	56.79	52.16
GSMUA_Achr6P03610_001	Banana	mitochondrion	48.75	51.61
HORVU2Hr1G081060.1	Barley	cytosol, nucleus	10.53	37.25
PGSC0003DMT400003844	Potato	nucleus	33.8	32.71
Os04t0464600-01	Rice	mitochondrion	26.87	29.31
Zm00001d003392_P001	Maize	mitochondrion	26.32	28.79
TraesCS2B01G346300.1	Wheat	mitochondrion	26.04	28.66
TraesCS2D01G327200.1	Wheat	nucleus	25.76	28.27
TraesCS2A01G335600.1	Wheat	mitochondrion	25.48	27.96
OQU81721	Sorghum	mitochondrion	27.42	15.33

Protein Annotations

EntrezGene:102600262	MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	UniProt:M0ZKC8	InterPro:NYN_limkain-b1	PFAM:PF01936	EnsemblPlantsGene:PGSC0003DMG400000998	PGSC:PGSC0003DMG400000998
EnsemblPlants:PGSC0003DMT400002602	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF2	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000294F828	RefSeq:XP_006350944.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000998]

Coordinates

chr11:-:6384621..6388191

Molecular Weight (calculated)

41278.4 Da

IEP (calculated)

9.541

GRAVY (calculated)

-0.506

Length

361 amino acids

Sequence
(BLAST)

001: MMNCVKVSSF IHAICSYKRF CHFESKSHLG FGSLDSPIRA SVGIFWDLDN KPPKSFPPFD AATKLKKAAG QFGVVRFTVA YANRHAFSYV PPLVRQQRKE
101: RKTLNLLEKS GVVKVEDPYI CRVCGRRFYT NEKLVNHFKQ IHEREQTKRL NQIESARGKM RVKLVAKYAM KMDKYKGAVR DVLTPKVGYG LADDLKRAGF
201: WVRTVSDKPQ AADVALRNHL VDVMDKRMVD YVVLVSDDSD FVEVLKEARL RCLKTVVVGD SNDGALKRTA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV
301: LKRLEWTYDP EVEKKLYYSE VESDDSDGIF SGEDDKEDVD ASISKEDAHA WWKLDSRSGH D

Best Arabidopsis Sequence Match ( AT4G12240.1 )
(BLAST)

001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR

Arabidopsis Description

Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.