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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000767.1-P Field mustard mitochondrion 72.25 74.08
CDY21264 Canola mitochondrion, nucleus, plastid 68.68 73.75
CDX90824 Canola mitochondrion, nucleus, plastid 63.46 73.1
VIT_02s0241g00170.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 25.0 68.42
PGSC0003DMT400002602 Potato cytosol 55.22 55.68
KRG97366 Soybean mitochondrion 52.75 53.93
KRH31550 Soybean mitochondrion 56.59 52.42
GSMUA_Achr6P03610_001 Banana mitochondrion 46.15 49.27
HORVU2Hr1G081060.1 Barley cytosol, nucleus 10.16 36.27
AT5G52010.1 Thale cress plastid 35.99 33.08
Os04t0464600-01 Rice mitochondrion 28.3 31.12
TraesCS2D01G327200.1 Wheat nucleus 28.02 31.0
Zm00001d003392_P001 Maize mitochondrion 28.02 30.91
TraesCS2A01G335600.1 Wheat mitochondrion 27.75 30.7
TraesCS2B01G346300.1 Wheat mitochondrion 27.47 30.49
OQU81721 Sorghum mitochondrion 28.57 16.1
Protein Annotations
MapMan:15.5.15Gene3D:3.30.160.60EntrezGene:826832UniProt:A0A178V1A8ProteinID:AEE83107.1EMBL:AK118936
ArrayExpress:AT4G12240EnsemblPlantsGene:AT4G12240RefSeq:AT4G12240TAIR:AT4G12240RefSeq:AT4G12240-TAIR-GEnsemblPlants:AT4G12240.1
TAIR:AT4G12240.1Unigene:At.66589EMBL:BT005409ProteinID:CAB45971.1ProteinID:CAB78267.1GO:GO:0003674
GO:GO:0003676GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987InterPro:IPR013087RefSeq:NP_192961.1InterPro:NYN_limkain-b1ProteinID:OAO99978.1
PFAM:PF01936PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001078
PO:PO:0001081PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022ScanProsite:PS00028PFscan:PS50157
PANTHER:PTHR35744PANTHER:PTHR35744:SF2UniProt:Q9STI7SUPFAM:SSF57667UniParc:UPI000000C63AInterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_typeSEG:seg::::
Description
Uncharacterized protein AT4g12240 [Source:UniProtKB/TrEMBL;Acc:Q9STI7]
Coordinates
chr4:+:7287803..7289225
Molecular Weight (calculated)
41911.1 Da
IEP (calculated)
9.425
GRAVY (calculated)
-0.668
Length
364 amino acids
Sequence
(BLAST)
001: MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK
101: LLNKLENKGL VKPPEPYFCG VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV LTPKEGYGLA DELKRAGFWV
201: KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK
301: KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS RTCR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.