Factsheet for Os06t0166200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0506100-00
Os04t0382800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	Os02t0506100-00	AT5G22310.1	21798944
AT5G52010.1	Os04t0382800-00	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87918	Sorghum	plastid	73.66	76.26
TraesCS7A01G128700.1	Wheat	nucleus, plastid	75.61	75.79
TraesCS7B01G028600.1	Wheat	nucleus, plastid	73.66	74.94
TraesCS7D01G127500.1	Wheat	nucleus, plastid	74.39	74.75
Zm00001d036297_P001	Maize	plastid	66.34	73.51
GSMUA_Achr8P18570_001	Banana	nucleus	44.63	68.03
KRH15394	Soybean	nucleus	41.22	50.75
CDY38889	Canola	nucleus	46.83	49.48
Bra029148.1-P	Field mustard	nucleus, plastid	46.59	49.23
CDY32605	Canola	nucleus	46.1	48.96
PGSC0003DMT400003844	Potato	nucleus	43.41	47.72
AT5G52010.1	Thale cress	plastid	45.85	47.47
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	49.02	45.27
KRH05651	Soybean	nucleus	41.46	44.74
Os04t0464600-01	Rice	mitochondrion	19.27	23.87

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:4340243	ProteinID:BAD67599.1	ProteinID:BAD67862.1	ProteinID:BAF18827.2
ProteinID:BAS96334.1	ProteinID:EAZ35949.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EnsemblPlantsGene:Os06g0166200	EnsemblPlants:Os06t0166200-01	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3
UniProt:Q5VRR3	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0000457918	RefSeq:XP_015641376.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Zinc finger, C2H2-type domain containing protein. (Os06t0166200-01)

Coordinates

chr6:+:3328557..3331513

Molecular Weight (calculated)

45396.4 Da

IEP (calculated)

6.963

GRAVY (calculated)

-0.534

Length

410 amino acids

Sequence
(BLAST)

001: MPPPLSFLHL AANPTPLHAS PLRRARLRHR LSLRTDHPSR RAVASASASA GENPSTPGGP IADVEMVRGK DGVWTARPPT VVVLWDLDNK PPRGPPFPAA
101: TALRDAASLL GRVVSVSAFA NRHAFSHVPA WVADERRERR AMDRAERAGA ASPPVPYSCA VCGRRFPTRP DLTRHFRQLH QRERNKKLSR LRSLKGKKRQ
201: KFRERFISGN TKYDDAAREL LTPKVGYGLA AELRRAGVHV RTVSDKPQAA DHALKRQVKH SVACGVDWLV LVSDDSDFTD TVRKARAADL RTVVVGDGCR
301: ALGSVADIWL PWDRVENGEV DEDMLRNGTH MGFRDEEEDE QDDDEFIVDW DTSDLDGVVD DIVATRTKLF GATTMSAFAD EEIMDGILGV GINGGDMLWS
401: SDDEDEDGYF

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.