CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11990
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52010.1	EES11990	AT5G22310.1	21798944
AT5G52010.1	KXG30263	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036297_P001	Maize	plastid	84.6	90.54
Os06t0166200-01	Rice	plastid	76.26	73.66
TraesCS7A01G128700.1	Wheat	nucleus, plastid	74.75	72.37
TraesCS7B01G028600.1	Wheat	nucleus, plastid	73.23	71.96
TraesCS7D01G127500.1	Wheat	nucleus, plastid	73.74	71.57
GSMUA_Achr8P18570_001	Banana	nucleus	47.22	69.52
KRH15394	Soybean	nucleus	41.92	49.85
CDY38889	Canola	nucleus	47.73	48.71
Bra029148.1-P	Field mustard	nucleus, plastid	47.47	48.45
CDY32605	Canola	nucleus	46.97	48.19
PGSC0003DMT400003844	Potato	nucleus	44.95	47.72
VIT_18s0001g10130.t01	Wine grape	nucleus, plastid	52.02	46.4
AT5G52010.1	Thale cress	plastid	45.71	45.71
KRH05651	Soybean	nucleus	42.42	44.21
OQU81721	Sorghum	mitochondrion	19.95	12.23

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8070886	UniProt:C5Z4W6	EnsemblPlants:EER87918	ProteinID:EER87918
ProteinID:EER87918.1	ProteinID:EER87922.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
ProteinID:OQU75894.1	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR35744	PANTHER:PTHR35744:SF3	SMART:SM00355
EnsemblPlantsGene:SORBI_3010G052500	SUPFAM:SSF57667	unigene:Sbi.1514	UniParc:UPI0001A8909E	RefSeq:XP_002436551.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:4101158..4103738

Molecular Weight (calculated)

44237.0 Da

IEP (calculated)

6.888

GRAVY (calculated)

-0.443

Length

396 amino acids

Sequence
(BLAST)

001: MPLALSFLHL PPNTAPFHSF QVHRTHHSHL HLSLRTRRAS ATVAAAEAEN PSASADVEMV RGRDGVWTAR SPTVVVLWDL DNKPPRGPPF PAATALIGAA
101: SLLGRVVSVS AFANRHAFSH LPVWVTAERR DRRALDRAER AGVVAPSVPY SCAVCGRRFP TRPDLTRHFR QLHERERNKK LSRLRSLKGK KRQKFRERFI
201: SGNTKYEDAA RELLTPKVGY GLASELRRAG VHVRTVSDKP QAADHALKRQ VKHSVACGVD WVVLVSDDSD FTDTVRNARA ADLRTVVVGD GCRALGKVAD
301: IWLPWDRVEN GEVDEEMLRS CTFAEYREDQ EDERGEQFIG DWDASAFDDV VDDIVGMRTN LLGATTISAF ADEDITDGIF DSMFWSSDDE EEDGYL

Best Arabidopsis Sequence Match ( AT5G52010.1 )
(BLAST)

001: MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK
101: VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER
201: YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH
301: ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF

Arabidopsis Description

AT5g52010/MSG15_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJ91]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.