Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45468 | Soybean | cytosol, peroxisome | 52.01 | 83.62 |
| KRH45469 | Soybean | nucleus | 22.84 | 83.62 |
| KRH74431 | Soybean | mitochondrion | 51.7 | 49.26 |
| KRH39527 | Soybean | extracellular, golgi | 40.9 | 48.98 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 47.84 | 47.26 |
| PGSC0003DMT400078676 | Potato | plastid | 47.84 | 43.6 |
| Solyc02g091710.2.1 | Tomato | plastid | 47.84 | 43.18 |
| CDY25618 | Canola | nucleus, peroxisome, plastid | 43.98 | 43.05 |
| Bra030218.1-P | Field mustard | nucleus | 43.98 | 42.41 |
| CDX89500 | Canola | cytosol, peroxisome, plastid | 43.52 | 41.9 |
| Bra017859.1-P | Field mustard | plastid | 40.28 | 41.3 |
| CDX72660 | Canola | cytosol, nucleus, peroxisome, plastid | 43.52 | 41.17 |
| AT2G22680.1 | Thale cress | cytosol, peroxisome, plastid | 42.9 | 40.7 |
| CDY31616 | Canola | nucleus | 42.75 | 40.32 |
| KRH72527 | Soybean | nucleus | 40.43 | 40.25 |
| AT4G37890.1 | Thale cress | nucleus | 44.75 | 39.24 |
| KRH16916 | Soybean | nucleus | 40.28 | 38.72 |
| CDY52535 | Canola | plastid | 41.36 | 37.75 |
| CDY08765 | Canola | plastid | 41.05 | 37.57 |
| Bra031849.1-P | Field mustard | plastid | 41.05 | 37.57 |
| Bra024408.1-P | Field mustard | plastid | 41.05 | 37.57 |
| Os04t0101800-01 | Rice | cytosol, mitochondrion, peroxisome, plastid | 39.81 | 37.45 |
| CDY45614 | Canola | plastid | 40.28 | 36.66 |
| AT5G65683.1 | Thale cress | peroxisome, plastid | 39.97 | 36.12 |
| TraesCS2A01G045100.1 | Wheat | peroxisome | 41.2 | 35.13 |
| TraesCS2D01G043700.1 | Wheat | peroxisome | 41.36 | 35.12 |
| GSMUA_Achr5P14740_001 | Banana | mitochondrion | 37.5 | 35.12 |
| TraesCS2B01G057300.1 | Wheat | peroxisome | 41.67 | 35.06 |
| Zm00001d024940_P001 | Maize | peroxisome | 39.81 | 35.01 |
| Zm00001d004553_P001 | Maize | peroxisome | 40.28 | 34.8 |
| GSMUA_Achr4P22090_001 | Banana | nucleus | 37.65 | 34.13 |
| GSMUA_Achr4P20870_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 38.27 | 33.88 |
| GSMUA_Achr7P01890_001 | Banana | mitochondrion | 36.73 | 33.33 |
| OQU81040 | Sorghum | peroxisome | 35.19 | 31.89 |
| CDY37838 | Canola | plastid | 24.07 | 31.2 |
| KRH51230 | Soybean | nucleus | 16.82 | 21.04 |
| KRH11654 | Soybean | nucleus, plastid | 17.44 | 20.43 |
| KRH36665 | Soybean | nucleus | 17.13 | 20.18 |
Protein Annotations
| EntrezGene:100794006 | MapMan:26.3.1.6 | Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | EMBL:ACUP02000435 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_01G097900 | UniProt:I1J6W3 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 |
| EnsemblPlants:KRH75634 | ProteinID:KRH75634 | ProteinID:KRH75634.1 | PFAM:PF00092 | PFAM:PF17123 | PFscan:PS50089 |
| PFscan:PS50234 | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF59 | SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 |
| SUPFAM:SSF57850 | UniParc:UPI00023372CB | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
| InterPro:vWFA_dom_sf | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:32298623..32301534
Molecular Weight (calculated)
72537.9 Da
IEP (calculated)
9.715
GRAVY (calculated)
-0.532
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGWRRTFR TSNTIPQNTH EPEICDYYNN INSSPKITSN FSFFSTPSLI PTRTNSPLSK HQCNYNNNAR TPSPTKRYSP TSFHQSTPSS PNSPSAFSLL
101: KSTLRLSKSS CKICTRSVKT GEGKAIFTAE CSHVFHFPCI AAHVKKQRLV TCPVCNANWK QLLQNADENK PHAELKTTKS FKPHNYNDDE PLMSPTSVSR
201: FNPIPESNEN EEEEDEEEQN DEQIKFNLSS SLVKTRNIEA FFSPEAAIVA SNWSSETYVT VLNVKVQPRN AAANRPPVDL VMVIDVRGSV TGEELWMLKR
301: SMQVVISSLG SADRLSVVAF SGGSKRLFPL RRMTRCGQTA ARRVVDALAS VELRREGTPA RNDALKKAAK VLEDRRQKNT VAKIILLTNS HEDHRLTTTR
401: FTVHSLIFSH DDNEFAKRVG NLLSVAAQDF KLELKLASRS AQAEITAVYS LAKGFTDALS PDSVALGDLC AAEERELLVE FKVPAGTASR GSHHRFISVR
501: CSHRDPFTQE LVNSKERELI VPGPHTVRSC DLRIEQLRRR HVSARAVAES RKCVARNDVS GALQLLSSAR ASVSREQGDE CLRWLEAKQA ELRNQKLRSS
601: NNNCLEEKGE PLTPMSAWRV AERLAKVAIM RKSMNRVSDL HGFEDARF
101: KSTLRLSKSS CKICTRSVKT GEGKAIFTAE CSHVFHFPCI AAHVKKQRLV TCPVCNANWK QLLQNADENK PHAELKTTKS FKPHNYNDDE PLMSPTSVSR
201: FNPIPESNEN EEEEDEEEQN DEQIKFNLSS SLVKTRNIEA FFSPEAAIVA SNWSSETYVT VLNVKVQPRN AAANRPPVDL VMVIDVRGSV TGEELWMLKR
301: SMQVVISSLG SADRLSVVAF SGGSKRLFPL RRMTRCGQTA ARRVVDALAS VELRREGTPA RNDALKKAAK VLEDRRQKNT VAKIILLTNS HEDHRLTTTR
401: FTVHSLIFSH DDNEFAKRVG NLLSVAAQDF KLELKLASRS AQAEITAVYS LAKGFTDALS PDSVALGDLC AAEERELLVE FKVPAGTASR GSHHRFISVR
501: CSHRDPFTQE LVNSKERELI VPGPHTVRSC DLRIEQLRRR HVSARAVAES RKCVARNDVS GALQLLSSAR ASVSREQGDE CLRWLEAKQA ELRNQKLRSS
601: NNNCLEEKGE PLTPMSAWRV AERLAKVAIM RKSMNRVSDL HGFEDARF
001: MLNGWRRAFC TSIPKETNQN DVDDDGLVGL RHKSTSRFGF FSTPSTPRSD SGTGTYSLRC RTSTATAVST TSSLPGTPKL KCKTTTTGET TPRNRSLVSL
101: LTPSSSSISP ASFTLLKSKL RFKQSSSNKC GICLQSVKSG QGTAIFTAEC SHTFHFPCVT SRAAANHNRL ASCPVCGSSL LPEIRNYAKP ESQIKPEIKN
201: KSLRVYNDDE ALISSPISPA GFHTILESDE NEDCEEFTGF SVNTPSPLTA KLLTDRNVDV KLSPESAIVA SGKGYETYSV VMKVKSPPFP TARGFARRVP
301: VDLVAVLDVS GRNSGGKLEM LKQTMRIVLS NLREMDRLSI IAFSSSSKRL SPLRRMTANG RRSARRIVDI ITVPGSVSGV GIDFSGEGMS VNDALKKAVK
401: VLDDRRQKNP FTAVFVLTDR QAHQVAQLAH SRIPIHTIWL SHAIPEDAFA RTINGYLSLS VQDLGLQLGI VSGLGQGEIT SVYSLSGRPA WLGTGSIRLG
501: DMYAEEERAL LVEIKSPVNN SLTGSRSHKI MTVRSRYVDP TTQELRNPED RALLIPTPLT VRSSSNPNIS RLRNLHVSTR AVAESRRLIE RNHYSGAHRL
601: LTSARALLVQ HGLSSSDACI RGLDAEIADL NSVKGRHVAA SESLESLTPT SAWKAAERLA KVAMVRKHMN RVSDLHGFEN ARF
101: LTPSSSSISP ASFTLLKSKL RFKQSSSNKC GICLQSVKSG QGTAIFTAEC SHTFHFPCVT SRAAANHNRL ASCPVCGSSL LPEIRNYAKP ESQIKPEIKN
201: KSLRVYNDDE ALISSPISPA GFHTILESDE NEDCEEFTGF SVNTPSPLTA KLLTDRNVDV KLSPESAIVA SGKGYETYSV VMKVKSPPFP TARGFARRVP
301: VDLVAVLDVS GRNSGGKLEM LKQTMRIVLS NLREMDRLSI IAFSSSSKRL SPLRRMTANG RRSARRIVDI ITVPGSVSGV GIDFSGEGMS VNDALKKAVK
401: VLDDRRQKNP FTAVFVLTDR QAHQVAQLAH SRIPIHTIWL SHAIPEDAFA RTINGYLSLS VQDLGLQLGI VSGLGQGEIT SVYSLSGRPA WLGTGSIRLG
501: DMYAEEERAL LVEIKSPVNN SLTGSRSHKI MTVRSRYVDP TTQELRNPED RALLIPTPLT VRSSSNPNIS RLRNLHVSTR AVAESRRLIE RNHYSGAHRL
601: LTSARALLVQ HGLSSSDACI RGLDAEIADL NSVKGRHVAA SESLESLTPT SAWKAAERLA KVAMVRKHMN RVSDLHGFEN ARF
Arabidopsis Description
WAVH1E3 ubiquitin-protein ligase WAVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ46]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.