CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG91449
KRG94975
KRH18664
KRH31638
KRH35367
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	KRG91449	AT2G04630.1	21798944
AT3G56270.1	KRH35367	AT2G04630.1	21798944
AT3G56270.1	KRG89812	AT2G41090.1	17360592
AT3G56270.1	KRG94975	AT2G41090.1	17360592
AT3G56270.1	KRH18664	AT2G41090.1	17360592
AT3G56270.1	KRG89812	AT2G41100.1	17360592
AT3G56270.1	KRG94975	AT2G41100.1	17360592
AT3G56270.1	KRH18664	AT2G41100.1	17360592
AT3G56270.1	KRH31638	AT4G14640.1	17360592
AT3G56270.1	KRH69070	AT4G14640.1	17360592
AT3G56270.1	KRG89812	AT5G21274.1	17360592
AT3G56270.1	KRG94975	AT5G21274.1	17360592
AT3G56270.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73215	Soybean	cytosol	78.71	83.09
KRH31225	Soybean	cytosol	55.54	58.21
KRG97647	Soybean	plastid	55.03	57.68
CDX93176	Canola	cytosol	29.98	45.6
CDY06986	Canola	cytosol	33.9	44.03
Bra016990.1-P	Field mustard	cytosol	33.73	43.81
CDY24901	Canola	cytosol	34.41	42.62
Bra000190.1-P	Field mustard	nucleus	33.56	41.56
CDY07602	Canola	nucleus	33.56	41.56
AT2G40480.1	Thale cress	cytosol	35.95	40.73
VIT_13s0067g02400.t01	Wine grape	nucleus	32.88	36.14
AT3G56270.1	Thale cress	cytosol	26.58	34.98
KRH65464	Soybean	nucleus	33.05	34.64
KRH76097	Soybean	nucleus	32.37	33.99
GSMUA_Achr8P21300_001	Banana	nucleus	24.7	33.88
Solyc06g050350.2.1	Tomato	nucleus	28.79	32.56
PGSC0003DMT400074781	Potato	nucleus	27.6	32.53
KRG94824	Soybean	cytosol	26.41	32.43
CDX72151	Canola	cytosol	23.17	32.23
GSMUA_Achr3P09860_001	Banana	nucleus	22.83	32.13
KRH00407	Soybean	nucleus	30.83	31.64
Os03t0339700-01	Rice	nucleus	28.45	30.7
EER92305	Sorghum	nucleus	27.94	30.09
GSMUA_Achr8P02810_001	Banana	mitochondrion	26.58	29.43
KRH40785	Soybean	nucleus	24.36	29.18
Os07t0677900-01	Rice	nucleus	25.72	29.09
Zm00001d047516_P001	Maize	nucleus	26.41	28.44
Bra007233.1-P	Field mustard	cytosol	23.0	28.24
CDY27228	Canola	cytosol	22.83	28.03
Zm00001d007164_P001	Maize	nucleus	26.24	27.8
EER97734	Sorghum	nucleus	27.26	27.68
TraesCS2A01G106600.1	Wheat	nucleus	27.6	26.82
TraesCS2B01G124200.1	Wheat	nucleus	27.94	26.16
HORVU2Hr1G018380.4	Barley	nucleus	28.45	26.05
TraesCS2D01G107200.1	Wheat	nucleus	26.41	24.92
Os05t0476100-01	Rice	cytosol, nucleus, plastid	24.02	24.91
Zm00001d010610_P001	Maize	cytosol	23.0	24.24
TraesCS1A01G299400.1	Wheat	cytosol	21.81	23.27
TraesCS1B01G309200.1	Wheat	cytosol	21.47	22.99
TraesCS1D01G298300.1	Wheat	nucleus	21.81	22.86
HORVU1Hr1G070120.3	Barley	nucleus	22.15	21.04
OQU78181	Sorghum	nucleus	19.59	8.35

Protein Annotations

EntrezGene:100806885	MapMan:35.1	EMBL:ACUP02008537	ncoils:Coil	EnsemblPlantsGene:GLYMA_14G053400	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903
GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	UniProt:K7M531	EnsemblPlants:KRH14870	ProteinID:KRH14870
ProteinID:KRH14870.1	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13	UniParc:UPI000233AE5C	InterPro:Web
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:4220629..4223317

Molecular Weight (calculated)

65557.3 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.478

Length

587 amino acids

Sequence
(BLAST)

001: MAESSPPETP ELTTEFGAGS GSGQNWGVRR VGLRAEIDTS PPFGSVKEAV TRFEKTGPWI PLFNFGEAYK SAEDFDIKRV EEEAAKLEKD LIVKELETLD
101: VLEELGATKA ILEELKQQLQ SEALNCFATP GGNSYEQVGA AVQNCVNGIN NEEQALQCQS PCATSSPDMF MMELGQAKIS LGKTISDLGV IQSSVEALNK
201: KMKKEKLFVE RTREKLASKF ATVSTQEVAK KETRLNPPEA TVGTGCTCHH PLNIARSLKF DTGQCNLMSE TRSSEVSRPL PEFGENGFSI KTAEMRWFAA
301: KKMEEAAMAA EAVALAEIEA LCNPEISLEF APPQHQKVPF ALGERSPLHP IVQIPQESTL EKVIDSKFQV DKISSSKLSI LKKLEEATEE VTRSKQILNE
401: ALNSVESANR KQHAAEEALR RWIPQDDLRG QPVYNYIKPK KFNQAGNCQD SPLPDVTRSI TVNNDQKPIL KSSVSMRDVL SKKQVPEEYT TKEMEEHTER
501: KVALSQMLRA LRQDQTLPTI PEKDGSNQRQ FIAQRKKFGF IQISLPLGKR RKRHEFNPIA YAWINIQNSC ISVLPFFIDS YVLLLFC

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.