Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G124200.1 | Wheat | nucleus | 85.85 | 85.17 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 82.64 | 85.1 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 77.49 | 75.19 |
| Zm00001d007164_P001 | Maize | nucleus | 55.79 | 62.64 |
| Os07t0677900-01 | Rice | nucleus | 51.61 | 61.85 |
| EER97734 | Sorghum | nucleus | 56.59 | 60.9 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 30.71 | 44.63 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 29.9 | 44.6 |
| KRH65464 | Soybean | nucleus | 38.75 | 43.04 |
| KRH76097 | Soybean | nucleus | 38.42 | 42.75 |
| KRH00407 | Soybean | nucleus | 35.85 | 38.99 |
| KRG94824 | Soybean | cytosol | 29.74 | 38.7 |
| AT3G51720.1 | Thale cress | nucleus | 24.92 | 38.08 |
| PGSC0003DMT400068339 | Potato | nucleus | 34.89 | 38.07 |
| KRH40785 | Soybean | nucleus | 29.58 | 37.55 |
| Solyc09g042710.2.1 | Tomato | nucleus | 34.57 | 37.52 |
| CDX78029 | Canola | nucleus | 23.47 | 35.61 |
| CDX73702 | Canola | nucleus | 23.63 | 35.59 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 24.76 | 35.57 |
| Bra036780.1-P | Field mustard | nucleus | 23.31 | 35.37 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 29.58 | 34.46 |
| CDY18389 | Canola | nucleus | 27.97 | 34.46 |
| Bra017122.1-P | Field mustard | nucleus | 27.81 | 34.12 |
| CDY07266 | Canola | cytosol, mitochondrion | 8.84 | 33.95 |
| Bra000057.1-P | Field mustard | nucleus | 26.53 | 33.81 |
| CDY07733 | Canola | cytosol | 18.01 | 33.43 |
| AT2G38370.2 | Thale cress | nucleus | 28.78 | 33.21 |
| CDY04348 | Canola | nucleus | 14.63 | 32.97 |
| CDY65893 | Canola | nucleus | 26.21 | 32.86 |
| CDX93176 | Canola | cytosol | 20.26 | 32.64 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 28.78 | 31.96 |
| PGSC0003DMT400074781 | Potato | nucleus | 25.24 | 31.53 |
| CDY19552 | Canola | mitochondrion | 9.81 | 30.5 |
| Solyc06g050350.2.1 | Tomato | nucleus | 25.4 | 30.44 |
| KRH31225 | Soybean | cytosol | 27.33 | 30.36 |
| CDY24901 | Canola | cytosol | 22.67 | 29.75 |
| Bra016990.1-P | Field mustard | cytosol | 21.54 | 29.65 |
| CDY06986 | Canola | cytosol | 21.54 | 29.65 |
| KRG97647 | Soybean | plastid | 26.53 | 29.46 |
| Bra000190.1-P | Field mustard | nucleus | 22.35 | 29.32 |
| CDY07602 | Canola | nucleus | 22.35 | 29.32 |
| CDY58310 | Canola | nucleus | 12.38 | 29.06 |
| CDY11490 | Canola | nucleus | 12.38 | 29.06 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 39.23 | 29.01 |
| KRH73215 | Soybean | cytosol | 24.76 | 27.7 |
| CDY70964 | Canola | cytosol | 7.72 | 27.59 |
| AT3G56270.1 | Thale cress | cytosol | 19.13 | 26.68 |
| AT2G40480.1 | Thale cress | cytosol | 22.19 | 26.64 |
| KRH14870 | Soybean | nucleus | 24.92 | 26.41 |
| CDX72151 | Canola | cytosol | 17.36 | 25.59 |
| Bra007760.1-P | Field mustard | nucleus | 12.54 | 24.3 |
| CDY27228 | Canola | cytosol | 17.68 | 23.01 |
| Bra007233.1-P | Field mustard | cytosol | 17.52 | 22.8 |
| Bra039972.1-P | Field mustard | cytosol | 8.36 | 20.8 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 9.81 | 18.1 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G107200.1 | EnsemblPlantsGene:TraesCS2D01G107200 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF4 |
| PFAM:PF05701 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:59551092..59553253
Molecular Weight (calculated)
68341.9 Da
IEP (calculated)
4.788
GRAVY (calculated)
-0.745
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEARPPLL PVRVPVNGED LAPASAGACG VGGGRAEIDT SAPFESVREA VDRFGGSAAW SSHLVNRIFA HHKKQNQTVC GGTEDEQCVN LAEQTAQIEK
101: ELGAKERETL DVLKQLESAK KIIADLKLKI QKKTAEDTLQ PEEEKQQQQQ ESNCSLTEVP TAEPEVKQPE GNAEATEEEQ TAEPEAKQQP EGNAEGAEMQ
201: AAEPEVRQPE GNDGADVDMC AGLDEQEQQQ QHTNLVLMEL EQAKSNLNRT TGDLAAIRAS IESLRNDIAT EKVLVERSRE KVSSDATLVS SLKQELDQTT
301: QKLQTLKDLQ RRREDPSDIF FEIKRMTTEI EQLRNAANAS KSEAMMLAAE IEQTKATIGT AEVRCLAAKK MEEAARAAEA LALAEIKALL CSEASAEGLQ
401: GEDGVSLSVE EYSELASMAR EADESSRNKI AAAMVHVDEA NQSKSESLTR LEEAKMEVEE CKKALQEALK RVETANRRKF AVEETLQRCR SETGHKRRSF
501: RGSPKFKTAA HRHRDDSHCM DIIDVSDNSM KPTLSIGQIL SMKLMGPDGY DKSVSDDTST SETSSISLGQ ILNRRQAILT YSSDTSANNK FSGKRKKFAF
601: TGLSVFLAKQ AKSKKKRGSD EN
101: ELGAKERETL DVLKQLESAK KIIADLKLKI QKKTAEDTLQ PEEEKQQQQQ ESNCSLTEVP TAEPEVKQPE GNAEATEEEQ TAEPEAKQQP EGNAEGAEMQ
201: AAEPEVRQPE GNDGADVDMC AGLDEQEQQQ QHTNLVLMEL EQAKSNLNRT TGDLAAIRAS IESLRNDIAT EKVLVERSRE KVSSDATLVS SLKQELDQTT
301: QKLQTLKDLQ RRREDPSDIF FEIKRMTTEI EQLRNAANAS KSEAMMLAAE IEQTKATIGT AEVRCLAAKK MEEAARAAEA LALAEIKALL CSEASAEGLQ
401: GEDGVSLSVE EYSELASMAR EADESSRNKI AAAMVHVDEA NQSKSESLTR LEEAKMEVEE CKKALQEALK RVETANRRKF AVEETLQRCR SETGHKRRSF
501: RGSPKFKTAA HRHRDDSHCM DIIDVSDNSM KPTLSIGQIL SMKLMGPDGY DKSVSDDTST SETSSISLGQ ILNRRQAILT YSSDTSANNK FSGKRKKFAF
601: TGLSVFLAKQ AKSKKKRGSD EN
001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.